KEGG T00631: GDI

Gluconacetobacter diazotrophicus PAl 5 (Brazil): GDI_0169

Entry

GDI_0169 CDS T00631

Definition

DNA ligase-like protein

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

gdi Gluconacetobacter diazotrophicus PAl 5 (Brazil)

Pathway

gdi03410	Base excision repair
gdi03420	Nucleotide excision repair
gdi03430	Mismatch repair
gdi03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:gdi03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:gdi03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:gdi03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:gdi03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M mRNA_cap_enzyme DNA_ligase_OB_2 DNA_primase_S

Other DBs

NCBI-GI:

NCBI-GeneID:

RhizoBase:

UniProt:

Position

177163..179733

AA seq 856 aa
MALDTYRNKRDFEATPEPEGAEAAEKPDTGAGHLFVIQKHAARRLHYDLRLEMDGVLKSW
AVTRGPSLNPGDKRLAVQVEDHPLDYGTFEGTIPKGQYGGGTVMLWDKGTWTPLHDPVRG
LAKGHLDFELRGEKLHGRWNLVRMDGHREGTHENWLLIKAADSDARSKNDADILEERPES
VKTGRAMDDIAAGAPGKDKVGKAAAQKAVTKKAAIPKDAPQADAAATGAAPCAGAKPGPL
PSFVEPELATLVRAAPTGPQWLHEVKFDGYRLLARIEAGRVVLLTRTGLDWTARFGDQIS
AALASLPVRAALIDGELVVETAGGTSDFSALQADLSAGRTDRFIFYVFDLLHLDGYDLRD
ATLEARKGALHDLVPDDAARLRFSGHFDEAGGQVLRHACRLGLEGIVSKQRDAPYRSGRG
RDWVKSKCVARQEFVIGGYVPSTANRGAVGSLVLGVQENGRLVHVGRVGTGFTAATAADL
FRRLQPLDVPDSPFAAALTARERKGVRYVRPDCVAEVEFRAWTADGHLRHAAFLGQREDK
PAADIVREVEAPDPVSSGPSSKPVKPVSPEPAPARPARTLTHPDRSYWPDAGVTKQDLAD
YYAAIWPRMAPFITDRALALLRCPNGIAGPRFFQKNLWKGAGGHLVPLQDPEGEAGTPLI
GLHDRDGLIDLVQAAALEIHPWGASVQAWSQPDMIVMDLDPGDGVPWSMVIEAAREIRAR
LERSGLASFVKTTGGKGLHVVAPLKPGADWAVVKAFTRSMAQAMVSDSPQRYVATITKSR
RQGRILVDYLRNQRGATAVAPYSPRARPGAPVAMPLAWNELGPDIGPAHFTIGTIGARLA
VADPWAEIRDAARPLR

NT seq 2571 nt +upstreamnt +downstreamnt
atggcgctggacacctatcgcaacaagcgcgacttcgaggcgacgcccgaacccgagggt
gccgaggcggcggaaaagccggataccggcgcgggccatctgttcgtcatccagaaacat
gcggcacgccgcctgcattacgacctgcggctggaaatggatggcgtgctgaagagctgg
gcggtgacgcgcggccccagcctgaacccgggcgacaagcgcctggccgtgcaggtcgag
gaccacccgctggattacggcacgttcgagggcacgatcccgaaggggcagtatggcggc
ggcacggtcatgctctgggacaagggcacgtggacgccgctgcacgatccggtccggggc
ctcgccaaggggcatctcgatttcgaactgcggggcgaaaagcttcacggacgctggaac
ctggtgcggatggacggacaccgcgagggaacgcatgagaactggctgctgatcaaggcc
gccgattccgatgcacggtcgaagaacgatgccgatatcctcgaagagcggccggaatcc
gtaaagaccggccgtgcgatggacgacatcgcggccggtgcgccagggaaggacaaggtc
gggaaggcggcggcccaaaaagccgtgacgaagaaagccgcgataccgaaggacgcgccg
caggcggacgcggccgcgacaggcgccgcaccctgcgcgggggcgaagcccggcccgttg
ccatccttcgtcgagcccgaactggccacgctggtgcgcgcggcccccaccggcccgcaa
tggctgcacgaggtcaagttcgacggctaccgcctgctggcgcggatcgaagccggacgg
gtcgtgctgctgacccgcacgggcctggactggaccgcccggttcggcgaccagatcagt
gccgcgctggcgtccctgccggtgcgggcagcgctgatcgacggcgaactggtggtggaa
accgcaggcgggacctcggatttttccgctctccaggccgatctcagcgccggccgcacc
gaccgcttcatcttctacgtcttcgatctgttgcatctggacggctacgacctgcgcgac
gcgacgctggaggcgcgcaagggcgcgctgcacgacctggtgccggacgatgcggcgcgg
ctgcgcttcagcggccatttcgacgaggccggggggcaggtgctgcgccatgcctgccgc
ctgggcctggagggaatcgtctccaagcagcgggacgcgccctaccggtcgggacggggc
cgggactgggtgaaatcgaaatgcgtggcgcggcaggaattcgtgatcggcggctatgtg
ccctcgaccgccaaccggggggcggtcggctcgctggtcctcggggtccaggaaaacggc
aggctggtccatgtcggccgggtcgggaccggcttcaccgccgcgacggcggcggacctg
ttccggcgcctgcaaccgcttgatgtccccgacagtcctttcgccgctgccctgacggcc
cgcgagcgaaagggggtgcgctatgtccgccccgattgcgtggcggaagtggaattccgc
gcctggaccgccgacggccatctgcgccacgcggcgttcctgggccagcgcgaggacaag
ccggcggccgacatcgtccgcgaggtcgaagcgcccgaccccgtatcctccggcccttca
tccaaaccggtcaaaccggtttccccggaacccgcgcctgcccgcccggcccgcaccctg
acccatcccgaccggtcctactggccggatgccggcgtgaccaagcaggacctggccgat
tattacgccgcgatctggccgcgaatggcgcccttcatcaccgaccgcgcgctggcgctg
ctgcgctgccccaacggcatcgcggggccgcgcttcttccagaagaatttatggaagggc
gccggcggccacctggtgccgttgcaggacccggagggcgaggccggcacgccgctgatc
ggcctgcacgaccgcgacgggctgatcgacctggtgcaggccgccgcgctggaaatccat
ccctggggcgcgtccgtccaggcgtggtcccagcccgacatgatcgtgatggacctcgat
cccggcgacggcgtgccctggtccatggtgatcgaggcggcgcgggaaatccgcgcgcgg
ctggaacggtccggcctcgcgtccttcgtcaagacgaccggcggcaaggggctgcatgtc
gtggcgccgctgaaacccggggccgactgggcggtggtcaaggccttcacccggtccatg
gcccaggcgatggtgtcggacagtccgcagcgttatgtcgccaccatcaccaaatccagg
cgccagggccgtatcctggtcgattacctgcgcaaccagcgcggcgcgacggccgtcgcg
ccctattccccccgcgcccgtcccggcgcgccggtcgcgatgccgctggcctggaacgaa
ctggggccggatatcggacccgcgcacttcaccatcgggacgatcggcgcccgattggcg
gtcgcggacccatgggcggagatccgtgacgcggcccggccgctccgttaa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
   RHIZOBASE-GDI (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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