KEGG   Gluconacetobacter diazotrophicus PA1 5 (JGI): Gdia_3137
Entry
Gdia_3137         CDS       T00798                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
gdj  Gluconacetobacter diazotrophicus PA1 5 (JGI)
Pathway
gdj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gdj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Gdia_3137
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gdj03019]
    Gdia_3137
Enzymes [BR:gdj01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Gdia_3137
Messenger RNA biogenesis [BR:gdj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Gdia_3137
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_30 AAA_19 AAA_22 Helicase_RecD CHASE8 YbbR
Other DBs
NCBI-ProteinID: ACI52867
Position
3434401..3435672
AA seq 423 aa
MTTFADLQLAEPLLRALNEEGYTTPTPIQAGAIPHLLAGRDLLGLAQTGTGKTAAFALPI
LQRLLTHHRRANPKGARVLVLAPTRELASQIDESFKSYARHMRLSHTVIFGGVGQGRQVE
AMRRGVDVLVAAPGRLLDLMGQGHIDLSGLEVLVLDEADRMLDMGFVRDIRRIVAELPRD
RQTLLFSATMPKSIADLAHGLLRDPATVQVTPPSSTVDRIRQAVMFVDTDNKRAALQLLV
DSPKVERAVVFTLMKHEANKVAAFLNDHGIIAEAIHGNKSQGARERAMAGFRSGAVKVLV
ATDIAARGIDVDDVTHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSLCDAEQRAWLRDI
EKAIGKKIPVVQEHPYHSEAAENSTLRPPVLGGGGGRGRGGGGGGRHQQRQGGGHRGGAR
RVA
NT seq 1272 nt   +upstreamnt  +downstreamnt
atgaccacatttgccgaccttcagcttgccgaaccgttgctgcgtgcgctgaatgaggaa
gggtacaccacccccacccccattcaggccggtgccatcccgcacctgctggccggtcgt
gacctgctgggcctggcgcagaccggaaccggcaagacggcggccttcgccctgccgatc
ctgcagcggctgctgacccatcatcgccgcgccaaccccaagggcgcgcgcgtcctggtc
ctggcgccgacgcgcgaactggcgtcgcagatcgacgagagcttcaaatcctacgcccgc
catatgcgcctgagccatacggtgatcttcggcggcgtcggccaggggcggcaggtcgag
gccatgcgccgcggcgtcgacgtgctggtcgcggccccgggccgcctgctggacctgatg
ggccaggggcatatcgacctgtcgggcctggaagtgctggtgctggacgaggccgaccgg
atgctggacatgggtttcgtccgcgacatccgccgcatcgtcgcggaactgccgcgcgac
cggcagacgctgctgttctccgccaccatgcccaagagcatcgccgacctggcccacggc
ctgctgcgcgatccggcgaccgtccaggtcacgccgccgtccagcacggtcgatcgtatc
cgccaggcggtgatgttcgtcgataccgacaacaagcgcgcggcgctgcaactgctggtg
gactcgcccaaggtcgagcgcgccgtggtgttcaccctgatgaagcatgaggcgaacaag
gtcgctgcattcctgaacgaccacggcatcatcgccgaggcgattcacggcaacaagtcg
cagggcgcgcgcgaacgcgcgatggcgggcttccgctccggcgcggtcaaggtgctggtg
gcgaccgacatcgcggcgcgcggcatcgacgtcgacgacgtgacgcatgtcttcaactac
gacctgccgaacgtcccggaaagctatgtgcaccgcatcggccgcacggcgcgcgccggg
cgcgacggctgggcggtgtcgctgtgcgatgccgagcagcgggcgtggctgcgcgacatc
gaaaaggcgatcggcaagaagattccggtggtgcaggaacatccctaccactccgaagcc
gccgagaattccaccctgcgcccgccggtgctgggcggcggtggcggccgtggccggggc
ggcggcggtggcggacgccaccagcagcgccagggtggcggtcatcgcggcggggcacgc
cgcgtcgcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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