KEGG T03966: GARCT

Geobacillus sp. 12AMOR1: GARCT_00005

Entry

GARCT_00005       CDS       T03966

Symbol

gyrB

Name

(GenBank) DNA gyrase subunit B

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

gea Geobacillus sp. 12AMOR1

Brite

KEGG Orthology (KO) [BR:gea00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gea03032]
    GARCT_00005 (gyrB)
   03400 DNA repair and recombination proteins [BR:gea03400]
    GARCT_00005 (gyrB)
Enzymes [BR:gea01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     GARCT_00005 (gyrB)
DNA replication proteins [BR:gea03032]
Prokaryotic type
  DNA Topoisomerases
   GARCT_00005 (gyrB)
DNA repair and recombination proteins [BR:gea03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      GARCT_00005 (gyrB)

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c HATPase_c_3

Other DBs

NCBI-ProteinID:

AKM17388

Position

4237..6159

AA seq 640 aa
MTMEQRVERAYDASQIQVLEGLEAVRKRPGMYIGSTGPKGLHHLVWEIVDNSIDEALAGY
CTEIHVTIGKDNSITVADNGRGIPVDVHEATGRPAVEVIMTVLHAGGKFGGGGYKVSGGL
HGVGASVVNALSEWLEVYVYRDGKIHYQKYERGEPCTDLQVIGETDRTGTTTRFKPDPEI
FTETTEFDYETLAARLRELAFLNRGLKITLTDERVDNRKSEYFYEGGIRSYVRHLNRTRE
VLHEEPIYIAGERDGIAVEIALQYNDGYTSNIYSFVNNIHTHEGGTHESGFKMALTRIIN
DYARKQQIFKDNDANLTGEDVREGLTAIVSIKHPSPQFEGQTKTKLGNSDARTVTDAVFS
EQFETFLLEHPTIARKIVEKGMMAARARLAAKKARELTRRKSALEVSNLPGKLADCSSRD
PSISELYIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARIDKILSNNEVRAIITAL
GTGIGEEFDISKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQFIEHGYVYIAQPPLY
KIEQGKQVRYAYNDRQLEKILAELPEQPKPTIQRYKGLGEMNPEQLWETTMNPEKRTLLQ
VSLQDAIDADETFEILMGDKVEPRRQFIEENARYVKNLDI

NT seq 1923 nt +upstreamnt +downstreamnt
atgacaatggaacaacgggttgagcgagcgtacgacgcgagccaaatccaagtgctcgaa
ggccttgaagcagttcgaaagcgcccggggatgtacatcggctcgacggggcctaaaggg
ctgcaccacctcgtttgggaaatcgtcgacaacagcattgacgaagcattagccggctat
tgcacggaaattcatgtgacgatcggaaaggataacagcatcacggtcgctgacaacggg
cgcggcattccagtcgatgtgcatgaggcaaccggacggccggctgttgaggtcatcatg
accgttctgcacgccggcgggaagttcggcggcggcggttataaagtatccggcggcttg
cacggcgtcggcgcctcggtcgtcaacgccttgtcggaatggctggaagtttacgtatac
cgagatgggaaaatccattatcaaaaatacgagcggggcgagccgtgcaccgatctgcaa
gtcatcggcgagacggaccgaaccgggacgacgacccgctttaagccggatccggaaatt
tttacagaaacgaccgagtttgattacgaaacgttggccgcccggctgcgcgagctcgcc
tttttgaaccgcggcttgaaaatcaccttgacggatgaacgggttgacaaccggaaaagt
gaatacttttatgaaggcggcatccgctcttacgtccgccatttgaatcggacgcgggaa
gtgttgcacgaagagccgatttacattgccggcgagcgcgacggcatcgctgtcgaaatc
gccttgcagtacaacgacggctatacgagcaacatttattcattcgtgaataatatccat
acgcacgaaggcggcacgcatgaatccggctttaaaatggcgttgacgcgcatcatcaat
gactacgcccgcaaacagcaaattttcaaggacaatgatgccaatttgacgggggaagat
gtgcgggaagggctgacggccattgtgtcaatcaaacacccctccccgcaatttgagggg
cagacgaaaacaaagctcggcaacagcgatgcgcgcacggtgacggacgctgtcttttct
gaacaatttgaaacgtttttgctcgaacacccgaccattgcccgaaaaattgtcgaaaaa
gggatgatggccgcccgcgcccgcctggcggccaaaaaggcgcgcgaactgacgcggcgc
aaaagcgcgcttgaagtctccaatttgccgggcaaacttgccgactgctcgtcaagagat
ccgtcgatcagcgagctgtatatcgtggagggggattcggcgggcggttcagcgaaacaa
gggcgcgaccgccatttccaggcgattttgccgttgcgtgggaaaattctcaacgtcgag
aaggcaagaatcgacaaaatcttgtccaacaacgaagtgcgggcgatcatcaccgctctt
ggcaccggcattggcgaagagttcgacatctcaaaggcgcgttatcataaagtcatcatt
atgaccgatgcggacgtcgacggcgctcatatccgcacgcttcttttgacattcttttat
cgctacatgcgtcaatttatcgagcacggctatgtgtacatcgcccaaccgcccctgtat
aaaatcgaacaaggaaaacaagtgcgctacgcttacaacgaccgccagctcgaaaaaatt
cttgctgagctgccggaacaaccgaagccgacaatccagcgctacaaagggttgggcgag
atgaacccagagcaactttgggagacgacgatgaacccggaaaagcgaacattgcttcaa
gtcagcttgcaagatgccattgacgcagatgaaacgtttgaaattttaatgggcgacaaa
gtcgagccacgccgccaatttatcgaagaaaacgcccgttatgtgaaaaacttggacatt
tag

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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