KEGG   Geitlerinema sp. PCC 7407: GEI7407_1175
Entry
GEI7407_1175      CDS       T02366                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
gei  Geitlerinema sp. PCC 7407
Pathway
gei03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gei00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GEI7407_1175
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gei03019]
    GEI7407_1175
   03400 DNA repair and recombination proteins [BR:gei03400]
    GEI7407_1175
Enzymes [BR:gei01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     GEI7407_1175
Messenger RNA biogenesis [BR:gei03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     GEI7407_1175
DNA repair and recombination proteins [BR:gei03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      GEI7407_1175
SSDB
Motif
Pfam: DEAD Helicase_C RecQ_Zn_bind ResIII
Other DBs
NCBI-ProteinID: AFY65672
UniProt: K9S4W7
Position
1402843..1404288
AA seq 481 aa
MHQAETPEWEQVRAAFQAIWGYPDFRPPQGDIVRSLLAGRDALVVMPTGGGKSICFQLPA
LMQRGLTLVVSPLVALMENQVQELRDRQLPAALLHSERSGLERKQVLRALEGQSLRLLYL
SPETLLSPPVWERLCRPEIGINGLILDEAHCLVQWGETFRPAYRRLGAVRSALLATKPPG
ARLAIAAFTATADPAAQRILREVLGLRQPAIFRLNPYRANLSPRVQVAWSPRDRRQKLVR
FVQAHPGAGLVYVRTRRDSEELSQTLRSQGFATAAYHAGLGAGDRRQIEADWQGDRLRFV
VCTNAFGMGVNKPNVRWVAHFQRPQLLSEYVQEIGRAGRDGQPAQALTLVSEPTGWLDPS
DRQRQAFFAGQIQERYRSAQALLSQIPRQGRVEEVSKRFPDGAIALALLHSAGLLRWRSP
FEYTLHGTAKALTPPASAQDMTVYLKSRQCRWRSLLQGFGFDQEATDFRCGHCDNCQRSR
P
NT seq 1446 nt   +upstreamnt  +downstreamnt
atgcatcaagccgaaacgccggagtgggagcaggttcgggcggccttccaggcgatctgg
ggctacccagactttcggccgccccagggagacattgtgcgatcgctgctggcgggtcgg
gacgccctagtggtcatgcccaccggcggcggcaaatcgatttgttttcagctgcccgcc
ctgatgcagcggggtctgaccctggtagtgtcgccgctggtggccctgatggagaaccag
gtccaggagctgcgcgatcgccagctgccggcggctctgctccacagcgagcgatcgggc
ctagagcgcaagcaggtgctgcgggcgctagagggccagtctctgcggctgctgtacctg
tctcccgaaaccctgctgagtccgccggtgtgggagcggctgtgccgcccggagatcggg
atcaatggcttgattttggatgaggctcactgcctggtgcagtggggagaaacctttcgg
cctgcctaccggcggctgggggcggtgcgatcggccctgttggcgaccaagccgccggga
gcgcgtctagcgatcgcggcttttacggcgacggcggacccggcggcccagcgcattttg
cgggaggtgctcggcctgcgtcagcctgctatttttcgtctcaacccctaccgagcgaac
ctgagcccgcgggtgcaggtggcctggagcccccgcgatcgccgccagaagctggtgcgt
tttgtgcaggcccatccgggggcgggcttggtgtacgtgcgcacgcgccgcgacagcgaa
gaactatcccaaaccctgcggtcccagggcttcgcgacggcggcttaccatgcgggcctc
ggcgcaggcgatcgccgccaaatcgaggcggactggcagggcgatcgcctccggttcgta
gtgtgcaccaacgcctttggtatgggggtcaacaagcccaatgtccgctgggtggcccat
tttcagcggccccagctcctgtctgagtatgtgcaggagatcgggcgggcggggcgcgat
ggccaaccggcccaggccctgacgctggtgagcgagcccacgggctggctcgaccccagt
gatcgccagcggcaggcattttttgctgggcagatccaggagcgctatcgctcggcccag
gcgctgctgagccagattccccgccagggccgggtcgaggaggtgtccaaacgctttccc
gacggggcgatcgccctggccctgctccacagcgccggtctgctgcgctggcgatcgccc
ttcgagtacaccctccacggcacagccaaagccctgacgccgcctgcctcggcccaagat
atgacggtttatttgaaaagccgccagtgccgctggcgatcgctgctccagggttttggc
tttgaccaagaggcaactgattttcgctgcggccactgcgacaactgccagcgatcgcgc
ccctag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (25)   

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