KEGG   Geobacillus sp. JS12: A0V43_14590
Entry
A0V43_14590       CDS       T04412                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
gej  Geobacillus sp. JS12
Pathway
gej03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gej00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A0V43_14590
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gej03021]
    A0V43_14590
   03019 Messenger RNA biogenesis [BR:gej03019]
    A0V43_14590
Transcription machinery [BR:gej03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     A0V43_14590
Messenger RNA biogenesis [BR:gej03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     A0V43_14590
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB ATPase_2 AAA_22 AAA AAA_25 NACHT Spore_III_AA DUF6417
Other DBs
NCBI-ProteinID: AMQ21901
UniProt: A0A142D4E9
Position
complement(2974833..2976107)
AA seq 424 aa
MELTLAALENMKLKELYELAKQYKISYYSKLTKKELIFAILKARAEQDGLFFMEGILEII
PSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLHVEAV
NGEDPEVAKERVHFPALTPLYPNRQMKLETTPDKLSTRIIDLIAPVGFGQRGLIVAPPKA
GKTMLLKEIANSITTNHPDVELIVLLIDERPEEVTDIERSVQGDVVSSTFDEVPENHIKV
AELVLERAMRLVEHKRDVVILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFG
AARNIEEGGSLTILATALIDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAIDIRR
SGTRKEELLIPKEHLEKLWAIRKTMADSPDFIERFLNKLRRTKSNEEFFALLDQEWKQGG
PLRL
NT seq 1275 nt   +upstreamnt  +downstreamnt
atggaattaacgttagcggctttagaaaacatgaagctcaaagagctgtatgagctcgcc
aagcaatacaaaatttcatactacagcaagttgacgaaaaaggagcttatttttgcgatt
ttgaaagcgcgtgccgaacaagacggcctctttttcatggaaggcatcctcgaaatcatt
ccgtcggaaggattcggctttttgcgcccgatcaactattccccgagctcggaagacatt
tacatttccgcttcccaaatccgccgttttgatttgcgcaacggggataaagtatccggc
aaagtgcggccgccgaaagaaaatgaacgctacttcggcttgcttcatgtcgaagcggtc
aacggcgaagacccggaagtcgccaaggagcgcgttcactttccagcgttgacgccgctt
tacccgaatcggcaaatgaagctggagacaacgccggacaagctgtcgacccgcatcatc
gacttgatcgctcccgtcggctttggccagcgcgggttgatcgtcgcgccgccgaaagct
ggcaagacgatgctgttgaaggaaattgccaacagcatcaccacaaaccacccggatgtc
gagttgatcgtcttgctcattgacgaacggccggaagaagtgaccgacatcgagcggtcg
gtgcaaggcgatgtcgtcagctcgacgtttgatgaggtgccggaaaaccatattaaagtg
gccgagcttgtcttagaacgggcgatgcgattagttgagcataagcgtgacgtcgtcatt
ttaatggacagcatcacccgcctcgcccgggcgtacaacttagtcattccgccgagcgga
cgcacgctctcgggcgggatcgacccagcggcgtttcatcgcccgaagcggtttttcggc
gcggcgcgcaacatcgaagaaggcggtagcttgacgattttggcgaccgccctcattgac
accgggtcgcgcatggatgacgtcatttacgaggaatttaaaggcaccggcaacatggag
ctccatcttgaccgctcgctcgccgagcgccgcattttcccagctattgacattcgccgt
tcgggaacgcgcaaagaggagctgctcatcccaaaagaacatttggaaaagctgtgggcg
atccgcaaaacgatggccgattcgcccgactttatcgagcggtttttgaacaaattgcgc
cggacgaagtcaaacgaagagtttttcgccttgctcgatcaggagtggaaacagggcggc
ccgctccgtctgtag

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