KEGG   Gemmata sp. SH-PL17: VT84_18440
Entry
VT84_18440        CDS       T04358                                 
Name
(GenBank) hypothetical protein
  KO
K03628  transcription termination factor Rho
Organism
ges  Gemmata sp. SH-PL17
Pathway
ges03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ges00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VT84_18440
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ges03021]
    VT84_18440
   03019 Messenger RNA biogenesis [BR:ges03019]
    VT84_18440
Transcription machinery [BR:ges03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     VT84_18440
Messenger RNA biogenesis [BR:ges03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     VT84_18440
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_25 Spore_III_AA OB_RNB AAA_22 NACHT
Other DBs
NCBI-ProteinID: AMV26383
UniProt: A0A142XH85
Position
4282902..4284758
AA seq 618 aa
MSDTKPEVTKPARPTRSRTRKTAEPTAPAPVPPPPAPVANEVAEDEGFAAGIVDEVPATP
EPAPPAVTPPPAVIPPPPPAPEVRERRAEEVRERRTDARESTRSERGSRSERAPEPREAP
RAEVPPPAPRVEAPPVPRAERPLPPAPRTELPPPAPRAELPPVAPPALTPAPVRVDPNEQ
GFDAETNSRYEEIKRGNTYITELQHMTIAQLQKAAKDEGIPREEYVGLKKQDLVYRILRE
LTKANGLMFGEGTLEVLPDGFGFLRSPDYNYLPCPDDIYISPSQIRRFGLRTGAVVAGQT
RPPKENERYFALLRVEAINYAEPDLLTQKVVFDDLTPLHPERRLKLETSADELNTRVIDL
ITPIGKGQRGLIVAPPRTGKTVLLQKMANSIIQNHPECYVIVLLIDERPEEVTDMSRTVK
GPRVEVVSSTFDEPPERHVQVSEMVIEKAKRLVEYGTDVVILLDSITRLARAYNTVSPGS
GKLLSGGLDATALYKPKRFFGAARNIDEGGSLTILATALVDTGSKMDEVIFEEFKGTGNM
EVHLERRMVDRRVYPAINVNASGTRKEELLRGEDELRLVHIMHRILADMNPVEAMELLLK
QLSKYKTNAEFLTSVTLT
NT seq 1857 nt   +upstreamnt  +downstreamnt
atgtctgatacgaagcccgaagtcaccaaacccgcgcgcccgacgcgcagtcgcacgcgg
aagaccgcggagccgaccgctccggcgccggttcccccgccccccgctccggtcgcgaac
gaggtcgcggaagacgagggattcgcggccggaatcgtggacgaagtgcccgcaacgccg
gaacccgcgccgcccgcggtaaccccaccccccgcggtcattccgcccccgcctcccgca
ccagaagtgcgcgagcgccgagcggaggaagtgcgcgagcgccggaccgatgcccgcgag
agcacccgctccgaacgcggcagtcgcagcgagcgtgctccggagccgcgagaagctccg
cgcgctgaagtgcccccgcccgcaccgcgggtagaggccccaccagtgccgcgcgcggag
cgtcctctgccgccggcccctcgcaccgaacttccgccgccggccccccgcgccgagttg
cccccggttgcgccgccggccctgaccccggcgcccgtgcgcgtggaccccaacgaacag
ggcttcgacgccgaaacgaactctcggtacgaggagatcaagcgcggcaacacgtacatc
accgaactgcaacacatgacgatcgcgcagttgcagaaggccgcgaaggacgaggggatt
ccgcgcgaagagtacgtcgggctgaagaagcaagacttggtgtaccgcatcctgcgcgaa
ctcaccaaggccaacgggctgatgttcggcgagggcacgctcgaagtgctcccggacggc
ttcgggttcctccgcagcccggattacaactacctcccgtgtccggatgatatctacatt
tcgccgtcgcagatccgccggttcgggttgcgcacgggggccgtcgtcgcgggccaaacg
cgcccgccgaaggagaacgagcggtacttcgcgctgctccgcgtggaggcgatcaactac
gccgaaccggacctgctcacgcagaaggtcgtgttcgacgatctcacgccgttgcacccc
gagcgccggttgaaactcgaaacgagcgcggacgaactcaacacccgcgtcatcgacctc
atcacgcccatcggtaaggggcagcgcgggctgatcgtcgccccgccgcgcaccgggaag
acggttctgctccagaagatggcgaactccatcatccagaaccacccggagtgctacgtc
atcgtgctcctgatcgacgagcgccccgaagaagtgaccgacatgagccggaccgtgaag
gggccgcgcgtggaggtcgtgtcgagcacgttcgacgagccgccggagcgccacgtccag
gtcagcgagatggtgatcgagaaggcgaagcgcctggtcgaatacggcaccgacgtggtc
atcctgctcgattcgatcacgcgcctggcgcgggcctacaacaccgtgtcgcccgggtcg
ggcaagttgctctccggtgggttggacgcgaccgcgctctacaagccgaagcggttcttc
ggcgcggcccgtaacatcgacgagggcgggtcgctcacgattctggcgaccgcgctggtg
gacaccggctcgaagatggacgaagtgatcttcgaggagttcaagggcacgggcaacatg
gaggtccatctcgagcggcggatggtggaccggcgcgtgtacccggcgatcaacgtgaac
gccagcggcacgcgcaaggaagaactgctgcgaggtgaggacgaactgcgcctcgttcac
atcatgcaccgcatcctggcggacatgaacccggtcgaggcgatggaactgctcctgaag
caactgagcaagtacaagaccaacgccgagttcctcaccagtgtgacgctcacgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (45)   

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