KEGG   Geospiza fortis (medium ground-finch): 102038208
Entry
102038208         CDS       T03755                                 
Symbol
NFKB1
Name
(RefSeq) nuclear factor kappa B subunit 1
  KO
K02580  nuclear factor NF-kappa-B p105 subunit
Organism
gfr  Geospiza fortis (medium ground-finch)
Pathway
gfr04010  MAPK signaling pathway
gfr04210  Apoptosis
gfr04218  Cellular senescence
gfr04620  Toll-like receptor signaling pathway
gfr04621  NOD-like receptor signaling pathway
gfr04622  RIG-I-like receptor signaling pathway
gfr04623  Cytosolic DNA-sensing pathway
gfr04625  C-type lectin receptor signaling pathway
gfr04920  Adipocytokine signaling pathway
gfr05132  Salmonella infection
gfr05164  Influenza A
gfr05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    102038208 (NFKB1)
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    102038208 (NFKB1)
   04218 Cellular senescence
    102038208 (NFKB1)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    102038208 (NFKB1)
   04621 NOD-like receptor signaling pathway
    102038208 (NFKB1)
   04622 RIG-I-like receptor signaling pathway
    102038208 (NFKB1)
   04623 Cytosolic DNA-sensing pathway
    102038208 (NFKB1)
   04625 C-type lectin receptor signaling pathway
    102038208 (NFKB1)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    102038208 (NFKB1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    102038208 (NFKB1)
   05168 Herpes simplex virus 1 infection
    102038208 (NFKB1)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    102038208 (NFKB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:gfr03000]
    102038208 (NFKB1)
Transcription factors [BR:gfr03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   RHR (Rel homology region) Rel/Ankyrin
    102038208 (NFKB1)
SSDB
Motif
Pfam: RHD_DNA_bind Ank_2 RHD_dimer Ank Ank_4 Ank_3 Ank_5 Death
Other DBs
NCBI-GeneID: 102038208
NCBI-ProteinID: XP_005418238
UniProt: A0A6I9HD52
Position
Un
AA seq 981 aa
MAAEDSYIMGVNDPQMFAVDQFMGMNALFNSTNYITADLPLRTADGPYLQIIEQPKQRGF
RFRYVCEGPSHGGLPGASSEKNKKSYPQVKICNYVGPAKVIVQLVTNGKYVHLHAHSLVG
KFCEDGVCTVLAGPKDMVVGFANLGILHVTKKKVFETLETRMIDACKKGYNPGLLVHPEL
SYLQAEGCEDRQLTEREREIIRQAAIQQTKEMDLSVVRLMFTAFLPDSNGSFTRKLDPVI
SDAIYDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEDENGGMWE
GFGDFSPTDVHRQFAIVFKTPKYRDVNITKPASVFVQLRRKSDLETSEPKPFLYYPEIKD
KEEVQRKRQKLMPNFSDGYGGGSGTGGGGMYGGAGGGAGSGFSFPSYGYSAFGGMHFPGT
TKSSAGMKHESLSNCTAEQDRKSCDKQNDQWDMKCDVKVEAVERTECRTSADEKKEDSGF
SCKTEVSEADCRWQDALFLEKALQLARRHCNALFDYAVTGDVKMLLAAQRHLTAVQDDNG
DNVLHLAIIHLHTELVKNLLEVMPRLNYDDIINMRNDLYQTPLHLAVITKQAKVVEDLLK
AGADVSLLDRHGNSVLHLAATEGDDKILSLILRHEKVPPMVNLPNAEGLSAIHMVVMANS
MSCLKQLIAAGVNVNAQEQKSGRTALHLAVEQENIPLAGCLLLEGDADVDSTTYDGTTPL
HIAAGRGSTKLAAVLKAAGANPHIENFEPLFDLDYVKDDEDDDEGIVPGTTPLDMAASSE
VYDILNGKPYESAEVLEDLLTQGHLRELNENSKMQLYKLLELPDPTKNWSTLAQKLGLGI
LNNAFRLSPSPSKTLLDNYEVSGGTVQELIAALRQMDHTEAIEIIQEALSISRRPPPLED
STAKALPLSSPLTFANGETGELYNSRFQDPESVCDSGVETSFRKLSFTYSDSLSSKSSLT
LGKMALGYGHQSSGQSNYIAD
NT seq 2946 nt   +upstreamnt  +downstreamnt
atggcagcagaagattcctatattatgggagtaaatgatccccaaatgtttgcagtggat
cagttcatgggaatgaatgctttatttaacagtaccaattacatcactgcagacttacca
ctacgaacagcagatggaccgtatcttcaaatcatagaacagccaaaacagaggggattt
cgtttccgatacgtctgtgaagggccttcgcacggtggacttcctggtgcttctagtgaa
aagaacaaaaaatcataccctcaggtcaaaatctgcaattatgttggacctgcaaaagta
attgtccagttagtaactaatgggaaatacgttcacttgcacgctcacagcctggtgggt
aaattctgcgaagacggcgtgtgcacggttctcgcaggacccaaggacatggttgtgggg
tttgcaaatcttggaatacttcacgtcacgaagaagaaagtgtttgaaactctggaaaca
cgcatgatagatgcttgcaagaagggatacaacccaggactcctggtgcatccagaactc
agctatcttcaagcagaaggatgtgaagacaggcagctaactgaacgggagagggaaatc
atccgccaggcagccatccagcagaccaaggagatggatctcagcgtggtgcggctcatg
ttcacagccttccttcccgacagcaacggcagcttcacacgcaagctggatcccgtcata
tcagatgcaatatatgacagcaaagctcccaatgcctccaacctaaaaattgtaagaatg
gacagaacagcagggtgtgtgacaggaggggaagagatttacctgctctgtgacaaggtt
caaaaagatgacattcagatacgtttctatgaagaggatgagaatggtggtatgtgggaa
ggctttggagatttctctcccacagatgtacatagacagtttgctattgtgttcaaaaca
cccaaataccgagatgtcaatatcacaaagccagcatctgtatttgtacaactgcgtagg
aaatctgatctagaaacaagcgaaccaaagcctttcctctactatccagaaatcaaagat
aaagaagaagtgcaaaggaaacggcagaagctcatgccgaatttctccgatggctatggt
gggggcagtggcactggaggtggtggcatgtacggaggggcaggtggtggtgctggctct
gggttcagttttccttcatatggatactctgcttttggagggatgcatttccctggcaca
acaaagtccagtgctggcatgaaacatgaaagtctatcaaattgcacagctgaacaagac
agaaagagctgtgataaacaaaatgaccaatgggacatgaaatgtgatgtgaaggtggaa
gccgtggagaggactgagtgcagaacatctgctgatgagaaaaaggaggattctggtttt
tcctgtaagactgaagtgagcgaagcagattgcaggtggcaggatgccctgttcctggag
aaggccctgcagcttgccaggcgccactgcaacgctctcttcgattatgccgtaaccgga
gacgtgaagatgctgctggcggctcagcgccatctcaccgctgtccaggatgacaatggg
gacaatgtccttcatttagcaattatccaccttcatactgagctggtgaaaaacctcttg
gaagtgatgccccgtttgaattacgatgacatcattaacatgagaaatgacctctatcag
acccccctgcacctggcagtaatcacaaagcaggcaaaggtggtggaagacttgctgaag
gctggagcagatgtcagccttctggatcgccacggcaattctgtcctacatttagctgct
actgaaggagatgacaagattttgagtctaatcctcaggcatgagaaggtacctcccatg
gtcaacctccccaatgctgaaggtctcagtgcaattcacatggtggtgatggcaaatagc
atgtcctgcctcaaacagctgattgctgctggagttaacgtcaatgctcaggaacaaaaa
tctggacgaaccgcattgcatttggctgttgaacaagagaacatccccttggcaggctgc
cttttgcttgagggcgatgcagatgtggacagcactacatatgatgggacaactccactt
cacatagcagctggaaggggctcaacaaaattggcagcagttctcaaagcagcaggtgca
aatcctcatattgagaactttgagccattgtttgatctagattatgtgaaagatgatgaa
gatgatgatgaagggattgtgcctggaacaacaccactggatatggcagccagctctgag
gtgtatgacatattaaatggcaaaccctacgagtcagcagaggttttggaggacttactc
acacaaggacatttgagagagctgaatgagaattccaagatgcagctttacaaactattg
gaattgcctgatccaaccaaaaactggtccaccctagcacaaaaactgggtcttggcata
cttaataatgccttcaggttgagcccttcaccatcgaaaaccttgctggataactatgag
gtgtctggtggtacagttcaagagctgatcgctgctttgagacagatggatcacacagaa
gccatagaaataattcaggaagcactgtcaatctcacgcagaccacctcccctggaggac
agcacagcaaaagctcttccattatcatcaccactcacctttgcaaatggagagacaggt
gagctctacaatagcagattccaagaccctgaaagtgtgtgtgacagtggtgtggagacc
tccttccgcaagctgagcttcacctactcagactctctgagcagcaagtcctcactaaca
cttggcaaaatggccctgggctatggacatcaaagttcagggcaaagcaattacatagct
gactag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (12)   
   KEGG PATHWAY (12)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (40)   

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