KEGG   Geospiza fortis (medium ground-finch): 102039511
Entry
102039511         CDS       T03755                                 
Symbol
SH3RF1
Name
(RefSeq) SH3 domain containing ring finger 1
  KO
K12171  E3 ubiquitin-protein ligase SH3RF [EC:2.3.2.27]
Organism
gfr  Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:gfr01009]
    102039511 (SH3RF1)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:gfr04121]
    102039511 (SH3RF1)
Enzymes [BR:gfr01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     102039511 (SH3RF1)
Protein phosphatases and associated proteins [BR:gfr01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     102039511 (SH3RF1)
Ubiquitin system [BR:gfr04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    102039511 (SH3RF1)
SSDB
Motif
Pfam: SH3_1 SH3_9 SH3_2 zf-RING_UBOX zf-C3HC4 zf-C3HC4_2 zf-RING_2 zf-RING_5 zf-C3HC4_3 zf-RING_4 zf-C3HC4_4 zf-RING_11 Prok-RING_4 Coilin_N zf-MIZ zf-Nse zf-rbx1
Other DBs
NCBI-GeneID: 102039511
NCBI-ProteinID: XP_005415613
UniProt: A0A6I9HB77
Position
Un
AA seq 833 aa
MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVSSRSELRCPECRTLVDCGV
DELPSNILLVRLLDGIKQRPRKPSASGGTAGTNALRVPSATGANCGSKDLQSSQAGQQQR
VQARSPPVRGVPQLPCAKALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVNGIHGF
FPTNFVQIIKPLPQPPPQCKALYDFEVKDKEADKDCLPFAKDDILTVIRRVDENWAEGML
ADKIGIFPISYVEFNTAAKQLIELDKPSGSAVDSGEGTSGAAHNNSTQKHTDTKKNTKKR
HSFTSLTMSNKASQSSQNRHSMEISPPVLISSSNPTAAARISELTGLSCSAPSQVHIGTT
GLIVTPPPSSPVTTGPSFTFPSEVTYQAALGNMNPPLPPPPLLSAAIIASATSGPQSASV
IQRSASGSADQVAHLRQQTRPSVYIAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGT
SMHTSKIGVFPGNYVAPVTRTVTSASQTKVPMSTAGQTGRVVTMVSPSTASGTSQKLQGN
GVAVNSSTVPTAVVSAAHIQTSPQTKVLMHVTGQMTVNQARNAVRTVASHSQERPTAAVT
PMQAQSPTCLIPAAHSLNSPNIAASSLEGDSSGKTANTHPGAPASPESALTAGGSAAVSK
TDKDGKKEKKGLLKLLSGASTKRKPRLSPPASPTLEAEQAAAELALQGAVGPELPSAGAH
SKAGSCPTEGEAPGLAQETLQRKGAALDAAVPPAPPPRQPCSSLGPVLNESRPLVCERYR
VVVSYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRNGKTGLFPGSFVENI
NT seq 2502 nt   +upstreamnt  +downstreamnt
atggatgaatcggctttgctggatctgttggagtgtcctgtttgcttagaacgccttgat
gcttctgcaaaagtcttgccttgccaacacacgttttgtaaacgctgcctgctgggcatt
gtgagctctcgcagtgagctgcgatgtcccgagtgccggactttagtggactgtggtgtt
gatgagctccccagtaatattttgctcgttagactcctggatggcatcaaacagaggcct
cggaaacccagcgccagcggtggcactgccggcacaaacgcgctgagggtccccagcgcc
actggagctaactgcggatcaaaggacctgcagagctcccaagctggacagcagcaaagg
gtgcaagcacggagccctcctgttaggggtgtacctcagttaccatgtgccaaagcattg
tataactatgagggaaaagaacctggagatcttaaattcagtaaaggagacatcatcatt
ttacgtcgacaggtggatgaaaattggtatcatggagaagtcaatggcatccatggcttt
tttcctaccaattttgttcaaattattaaacctttacctcaacctccgcctcagtgcaaa
gcactttatgattttgaagtaaaagacaaggaagcagataaagactgtttaccatttgca
aaggatgatattctgactgtaattcgccgtgtggatgaaaactgggcagaaggaatgctg
gctgacaagataggaatatttccaatttcctatgttgagtttaacacagcagccaaacag
ttgatagaattggacaagccctcaggttctgctgttgactctggagaaggtacctctggg
gcagcccacaacaattcaacccaaaagcacaccgataccaagaaaaacaccaaaaaacga
cactcttttacctccctcaccatgtccaacaaggcttctcagtcctctcagaaccgccac
tccatggaaatcagtcctcctgtcctcatcagctccagcaaccccacggctgcagcccgc
ataagtgagctgaccgggctgtcctgtagtgccccctctcaggttcatattggcactaca
gggctgattgtgactccaccccccagcagcccagtcacaacagggccttccttcaccttc
ccctcagaagttacctaccaagctgctcttggtaatatgaatcctccccttccgccacca
cctcttttgtctgctgcaatcattgcatcggccacttctggacctcagtctgcaagtgtc
atacaaaggtctgcatcaggatcagctgaccaagtggcacatttacgacagcaaactcgt
ccaagtgtgtatattgctatctacccctacactcctcgaaaagaagatgaactggaactg
cggaaaggagaaatgttcctggtgtttgaacgctgccaagatggctggttcaagggaact
tccatgcatacaagcaagattggtgtttttcctggaaattatgtggctccagttacaagg
acagtgacaagtgcatcacaaacaaaagttcccatgtctactgctggccaaacaggacga
gtggtgactatggtcagcccttccactgctagtggaacatcccagaagctccaggggaat
ggtgtggcagtgaactccagcacagtgcccacagcagtggtttctgcagcacatatccaa
accagtcctcaaaccaaggtccttatgcacgtgacaggacaaatgacagtcaaccaggct
cgaaatgcagttagaacagttgcctcacatagtcaagaaagacctacggcagcagtcaca
cccatgcaagcacaaagtccaacctgccttattcctgcagctcattctctgaattctcct
aacattgctgcttcatctttggagggagatagcagtggaaaaactgcaaacactcaccct
ggagctcctgcatctccagagagtgctttaacagctggtggaagtgctgctgtcagtaaa
acagacaaggatggcaagaaagaaaagaagggtctgctgaagctgctttctggagcatcc
accaagcgcaagcctcggctgtcgcctccagcgtcacccaccctggaggctgagcaggct
gcagcagagctggccctgcagggtgcagtggggcccgagcttccctcggcaggggctcac
agcaaggctggctcctgtcccacggagggtgaggccccgggactggcacaggagacgctg
cagcgcaagggcgctgccctggacgccgctgtcccccccgccccgccgccccggcagcct
tgctcctcgctggggcccgtcctcaatgagtccaggcctctcgtgtgtgaaaggtacaga
gttgtggtatcctatcctcctcagagcgaagcagaacttgaactgaaggaaggtgacatt
gtttttgtacacaagaaacgcgaggatggctggttcaaaggcactctgcaacgaaatgga
aagactggccttttccctggcagctttgtagagaacatttga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (17)   
   Pfam (17)   
All databases (49)   

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