KEGG   Geospiza fortis (medium ground-finch): 102043442
Entry
102043442         CDS       T03755                                 
Symbol
APEX1
Name
(RefSeq) apurinic/apyrimidinic endodeoxyribonuclease 1
  KO
K10771  AP endonuclease 1 [EC:3.1.11.2]
Organism
gfr  Geospiza fortis (medium ground-finch)
Pathway
gfr03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    102043442 (APEX1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gfr03400]
    102043442 (APEX1)
Enzymes [BR:gfr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.2  exodeoxyribonuclease III
     102043442 (APEX1)
DNA repair and recombination proteins [BR:gfr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    AP endonucleases
     102043442 (APEX1)
SSDB
Motif
Pfam: Exo_endo_phos
Other DBs
NCBI-GeneID: 102043442
NCBI-ProteinID: XP_014166968
Position
Un
AA seq 182 aa
MTGGAKWVQEEAPDVLCLQETKCAASAVPAELRELPGLPHQFWSSAKDRPGYSGAAFLRF
LQRLDARKPVLLCGDLNVAHAEIDLCHPRANRASAGFTPQEREGFSKLLDSGFVDSFRHL
YPEARGAFTFWTYLGGARARNVGWRLDYAVVSRRLLGALCDCKIRSAVQGSDHCPITALL
AV
NT seq 549 nt   +upstreamnt  +downstreamnt
atgacgggcggggccaagtgggtgcaggaggaggcgccggacgtgctgtgcctgcaggag
accaagtgcgcggcgtcggcggtgccggccgagctgcgggagctgccagggctgccgcac
cagttctggagcagcgccaaggaccggccgggctacagcggcgccgccttcctgcgcttc
ctgcagcgcctggacgcgcgcaagcccgtgctgctctgcggcgacctcaacgtggcgcac
gccgagatcgacctgtgccacccgcgcgccaaccgcgccagcgccggcttcacgccgcag
gagagggagggcttctccaaactcctcgactccgggttcgtggactccttccggcacctg
taccccgaggccaggggcgccttcaccttctggacgtacctgggcggcgcgcgggcgcgc
aacgtgggctggcggctggactacgccgtggtgtcgcggcgcctgctgggggcgctgtgc
gactgcaagatccgcagcgccgtccagggcagcgaccactgccccatcacggcgctgctg
gccgtttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (14)   

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