KEGG   Geospiza fortis (medium ground-finch): 102044000
Entry
102044000         CDS       T03755                                 
Symbol
LNX1
Name
(RefSeq) ligand of numb-protein X 1
  KO
K10692  ligand of Numb protein X 1/2 [EC:2.3.2.27]
Organism
gfr  Geospiza fortis (medium ground-finch)
Brite
KEGG Orthology (KO) [BR:gfr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:gfr04121]
    102044000 (LNX1)
Enzymes [BR:gfr01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     102044000 (LNX1)
Ubiquitin system [BR:gfr04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Ligand of Numb proteins
    102044000 (LNX1)
SSDB
Motif
Pfam: PDZ PDZ_6 PDZ_2 zf-C3HC4 zf-C3HC4_2 zf-RING_UBOX zf-RING_2 zf-RING_5 zf-C3HC4_3 zf-C3HC4_4 zf-rbx1 TRAF3_RING
Other DBs
NCBI-GeneID: 102044000
NCBI-ProteinID: XP_005415548
UniProt: A0A6I9HBR5
Position
Un
AA seq 732 aa
MSQKEEEMEDSSLPLCVTCGQAHLPEENHLYSYTEEVDDDLICHICLQPLLQPLDTLCGH
TFCTACLTNFLVEKDFCPMDRKLVILQTCRKSSILVNNLLDKLMVSCPFTEHCSEVVQRG
HLEQHFQTQCKGASHYGLTKERKRRSQDCSPDRGSSLAVAALGPELSAAAAIALMTDEPG
LVNPAFSPTSEDSQLGSGPGDLHRSNRNRTRHFERSTIRSRSFKKINKAFSVLRRTKSGS
AVSNQTDRERETVGNAAAGEEGFPRLYHLIPDGEVTCIKISRTDPHESLAIRIVGGSETP
LVHIIIQHIYRDGVIARDGRLLPGDMILKVNGMDIKNVPHNYALSILKQPCHVLRLTVLR
EQRYRCRNSRLSLDAHCNRDDSFHVVLNKSSPDEQLGIKLVRKADEPGVFIFNLLEGGMA
ARDGQLQENDRVLAINGHDHRYGSPESAAQLIQASEKQVHLVVSRQSRQQTPDLLQETGW
ASSAGGSQPCPAERNNAGKSTLHTVTCHEKVVAVRKDHTESLGMTVAGGASNREWDLPIY
VISVEPGGVISRDSRIKTGDILLNVNGIDLTGVSRSEAVALLKNTNSSVVLKALEMRACE
AQEEQGHLPPPEDTQVTAESSEWSPSWVMWLGLPRYLYSCKEIVLRRNTSGSLGFSIVGG
YEEHTGNKPFFIKSIVGGTPAYNDGRIRCGDILIAVNGRNTSGMMHSCLARMLKELKGKI
TLTIVSWPGTFL
NT seq 2199 nt   +upstreamnt  +downstreamnt
atgagccagaaagaagaagaaatggaggacagctccctgccactctgtgtcacctgcggc
caagcacatttaccagaagaaaatcacttgtacagctacactgaagaggtcgatgatgat
ctgatatgccacatttgcctgcaacctttgcttcagccattagacacgctctgtggtcac
accttctgcacagcctgccttacaaacttccttgtggaaaaagacttctgtcccatggac
cgcaagcttgtgattctccagacgtgcaggaagtccagcatactagtgaataacctcctg
gacaagctaatggttagctgccctttcacagaacactgctcagaggttgtgcaacgtggt
caccttgaacagcatttccaaacccaatgtaaaggagcatcccactatggccttaccaag
gaacggaagaggcgttcccaggactgctctccagaccgtggctccagcttggcagtggct
gccctgggccctgagctctcagcagctgcggccattgccttaatgacagacgagccaggg
ctggtgaacccggccttcagccccacctcagaggacagccagctgggcagcggccccggg
gacctgcaccgcagcaaccgcaaccggactcgacactttgaacgttctactataagaagc
agatcttttaaaaaaataaacaaagcgttcagtgttcttcgaaggacaaaaagtggaagt
gctgtttccaaccagactgaccgggaaagggagactgttggaaacgctgctgctggagag
gaaggttttcccaggctgtaccacctgattccagatggggaggttacctgcattaagatc
agccgcaccgacccccacgaaagtctggccattaggatcgtgggaggcagcgagacccct
ttggttcacattattatacagcatatttatcgagatggggtgattgccagagatggacga
ttgctgcctggagacatgatactaaaggtaaacggcatggacatcaaaaatgtgcctcac
aactatgccctgtcaatcctgaagcagccgtgccacgtgctgcgactgacggtgctgcga
gagcagaggtaccggtgccggaacagcaggctttccctcgatgctcactgcaacagggat
gacagcttccatgtagtgctgaacaagagcagtccggatgagcagctggggataaagctg
gtccgcaaggccgacgagccgggggtgttcattttcaacctgctggagggcggcatggcc
gcgcgggacgggcagctgcaggagaacgaccgcgtgctggccatcaacgggcacgaccac
cgctacggcagccccgagagcgccgcgcagctcatacaggccagcgagaagcaggttcac
ttggtggtgtcgcggcagagccggcagcagaccccggacctcctgcaggagacgggctgg
gcttccagcgccggcggctcccagccctgtcccgccgagagaaacaacgccggcaagagc
acccttcacactgtcacctgtcatgagaaggtggtggctgtccgaaaagatcacacggaa
tcactgggaatgactgtggcaggtggagcatctaaccgggaatgggatttgcctatctat
gtgataagtgtggaacctggaggagtgatcagcagagacagcaggataaaaacaggtgac
atcctcctgaacgtgaacggcattgatctgacgggagtcagccggagtgaggccgtcgcc
ctgctgaagaacaccaactcctcagtggtgctcaaagccctggagatgagggcatgtgaa
gcccaggaggagcagggtcacctaccaccccctgaggacacacaagtgactgctgagagc
agcgagtggtcgccgtcctgggttatgtggctggggctgccacgatatttgtacagctgc
aaagaaattgtattacgaagaaatacatctggaagtcttggcttcagcatcgtaggaggt
tatgaagaacatactgggaacaaaccattctttatcaaatccattgttgggggaacacca
gcatataatgacggcagaattagatgcggtgacatcctcattgctgtcaatggcaggaac
acatcaggaatgatgcattcctgcttggcaaggatgctcaaagaactaaaaggaaaaatt
actctcacaattgtgtcctggcctggcacatttttataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (12)   
   Pfam (12)   
All databases (38)   

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