KEGG   Gallus gallus (chicken): 424442Help
Entry
424442            CDS       T01006                                 

Gene name
LAMC1
Definition
laminin, gamma 1 (formerly LAMB2)
Orthology
K05635  
laminin, gamma 1
Organism
gga  Gallus gallus (chicken)
Pathway
Focal adhesion
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:gga00001]
 Environmental Information Processing
  Signaling molecules and interaction
   04512 ECM-receptor interaction
    424442 (LAMC1)
 Cellular Processes
  Cell communication
   04510 Focal adhesion
    424442 (LAMC1)
Cell adhesion molecules and their ligands [BR:gga04516]
 1. Immunoglobulin Superfamily
  Neural system
   Enzymatic CD
    PTPRF, LAR; receptor-type tyrosine-protein phosphatase F [KO:K05695]
     Laminin-1 Extracellular matrix (ECM) components
      424442 (LAMC1)
 2. Integrin Family
  Beta1 integrins
   VLA-1
    ITGB1; integrin beta 1 [KO:K05719]
      424442 (LAMC1)
     Laminin-2 Extracellular matrix (ECM) components
      424442 (LAMC1)
   VLA-2
     Laminin-1 Extracellular matrix (ECM) components
      424442 (LAMC1)
   VLA-3
      424442 (LAMC1)
     Laminin-10 Extracellular matrix (ECM) components
      424442 (LAMC1)
     Laminin-11 Extracellular matrix (ECM) components
      424442 (LAMC1)
   VLA-6
     Laminin-1 Extracellular matrix (ECM) components
      424442 (LAMC1)
     Laminin-8 Extracellular matrix (ECM) components
      424442 (LAMC1)
   VLA-7
     Laminin-1 Extracellular matrix (ECM) components
      424442 (LAMC1)
  Beta4 integrins
   alpha 6 beta 4
    ITGB4; integrin beta 4 [KO:K06525]
     Laminin-1 Extracellular matrix (ECM) components
      424442 (LAMC1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
CGNC: 
Position
8
AA seq 1603 aa AA seqDB search
MGGVGGRRALLRVLALLAVLALPRGGGAAMDECTEERSGRPQRCMPEFVNAAFNATVVAT
NTCGTPAEEYCVQTGVTGVTQSCHLCDASQPHLRHGASFLTDYNSQADSTWWQSQSMLAG
VQHPAAVNLTLHLGKAFDITYVRLKFHTSRPESFAIYKRTREDGPWVPYQYYSGSCESTY
NKVNRGFIRTGEDEQQALCTDEFSDISPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTA
TDIRVSLNRLNTFGDEVFNDPKVLKSYYYAISDFAVGGRCKCNGHASECIRNELGKLVCN
CKHNTFGDDCEKCLPFFNDRPWRRATAESANECLPCDCNGRSQECYFDPELYRSTGHGGH
CMGCRDNTDGAHCERCRDSFYRLGSEEGCLPCSCNPVGSLSTQCDSYGQCSCKPGVMGEK
CDRCQPGFHSLSEAGCRPCSCNPAGSTGECNMETGRCTCKDNVEGFHCERCKPGFFHLDP
SNPRGCTPCFCFGHSSVCTNAIGYSVYSITSSFQFGEDEWHAEQRDGSQVPLQWSSETQD
ISVISDSYFPIYFVAPRKFLGNQVLSYGQNLTFSFRVDRRDTRLSAEDLVLEGAGLRVSV
PLIAQGNSYPSESPLTYTFRLHEAADYPWRPALSAFDFQKLLHNLTAIKIRGTYSERSAG
HLDDVTITSAVPGAGVPAAWVESCSCPAGYEGQFCERCSPGYRRETPGLGPYSPCVPCTC
NGHSETCDPETGMCDCRDNTAGSHCEKCSDGYYGDATAGTALDCQPCPCPGGSSCAVVPR
TKEVVCTSCQTGTTGKRCELCDDAYFGDPLGENGAVRPCRLCQCNDNIDPNAVGNCNRQT
GECLKCIYNTAGFYCDRCKDGFFGNPLATNPADKCRACHCNPYGTVNQQTSCNQVTGQCE
CLSHVTERDCSACEPGFFNLQSGRGCERCDCHALGSTNGQCDIWTGQCECQPGVTGQRCD
RCEANHFGFGPEGCKPCDCDPEGSRALQCREDGRCECKEGFVGSRCDQCEENYFYNRSWP
GCQECPACYRLVKDKVAEQRERLRELENLIANLGTGEETITDQAFEERLKQAERDVMELL
REAQNSKDVDQGLMDRLRDINSTLTSQLSRLRNIQNTVQETENLAEQARGRVEDTEDLIA
MASDMLEKAKMAAGNVSITPPESSSDPNNMTLLAEEARRLAERHKQEADEIVRIAKAAND
TSTEAYQLLLKTLAGENQTARDIDELNQKYNQARNISRDLERQANRVLEEAEEAGNKALQ
IYANLTNLPTVDTTGLENEANKIKKEAEELDQLIARKLKDYEDLREDMKGKELEVKNLLE
KGKTEQQTADQLLARADAAKALAEEAARKGNGTLQEANTILSNLKDFDKRVNDNKTAAEE
ALKKIPAITQTIAEANNKTRQAELALGNAAADAREAKTRADDAEKIASAVQKSAAATRAE
ADKTFSDVTGLAREVDDMMKQLQEAEKELKRKQDDADQDMMMAGMASQAAQEAEDNARKA
KNSVNSLLAVINDLLDQLGQLETVDLNKLNEIEGTLNSAKDQMKDSDLDQKVAFLEREAR
KQDDAIQSYNRDIEEILKDISNLEDIRKTLPSGCFNTPSIEKP
NT seq 4812 nt NT seq  +upstreamnt  +downstreamnt
atgggcggcgttggcgggcggcgggcgctgctgcgggtgctggcgctgctggccgtgctg
gcgctgccccgcggcggcggcgcggcgatggacgagtgcacggaggagcggagcgggcgg
ccgcagcgctgcatgcccgagttcgtcaacgccgctttcaacgccacggtggtggccacc
aacacgtgcggcacgccggccgaggagtactgcgtgcagaccggcgtcacaggcgtaacc
cagtcgtgccacctgtgcgacgcctcccagccccacctgcggcacggcgcctccttcctc
accgactacaacagccaggccgacagcacctggtggcagagccagagcatgctggccggc
gtgcagcaccccgccgccgtcaacctcaccctgcacctcggaaaggcctttgacatcacc
tacgtgcggctgaagttccacaccagccggccagagagcttcgccatctacaaacgcacg
cgggaggatggcccgtgggtgccctaccagtattacagcgggtcgtgtgagagcacctac
aacaaagtcaaccggggctttattcggactggggaggacgagcagcaggcgctgtgcacg
gatgagttcagtgacatctcccccctcactgggggcaacgtggctttctcaacgttggag
gggcgtcccagcgcctacaactttgacaacagccccgtgctgcaggaatgggtgacggcc
accgatattagggtgagcctcaaccgcctcaacaccttcggagatgaagttttcaatgac
cccaaagtcctcaagtcgtattactacgcgatttctgattttgccgtgggtggaagatgc
aaatgcaatggccatgcgagcgagtgcataaggaacgagcttgggaagctggtctgcaac
tgcaagcacaacacctttggggatgactgtgagaagtgccttcccttcttcaatgaccgg
ccgtggaggagagcaacagcagaaagtgccaacgagtgcttgccttgtgactgcaatggg
aggtcacaggagtgctacttcgaccccgagctgtaccgctccaccggccacggcgggcac
tgcatgggctgccgggacaacaccgacggcgcccactgcgagaggtgcagggacagcttc
taccgcctcgggagcgaggagggctgcctgccctgcagctgcaaccccgtgggctctctc
agcacacagtgtgatagctacggccagtgcagctgcaagcctggtgtcatgggggagaaa
tgtgaccgctgccagccaggcttccactctctctctgaggctgggtgcaggccctgttct
tgcaatcctgctggcagcacaggtgaatgcaacatggaaacaggacggtgtacttgcaag
gacaacgttgagggcttccactgtgagagatgcaaacctgggtttttccatctggatccc
tcaaatccaagaggctgtaccccctgcttctgttttggacactcttcggtttgcaccaat
gccattggctacagcgtgtacagcatcacctccagctttcagtttggagaggacgagtgg
cacgctgagcaacgtgacggctcccaggtccctctgcagtggagttcagagacccaggac
atctctgtcatctcagacagctacttccccatctattttgttgcaccacgcaaattcttg
ggcaaccaagttttgagctacggtcagaacctgaccttctccttccgtgtggacagacgg
gacacacgtctctcagcagaggacctggtactggaaggggccgggctgcgtgtgtcggtg
cctctcattgcccagggcaactcgtaccccagtgagagcccactgacctacaccttcagg
ctccatgaggctgctgattacccgtggaggcctgctctctctgcatttgacttccagaag
cttctccacaatttgactgccatcaagatccgtggaacatacagcgagagaagtgccggc
catctggatgacgttaccatcaccagtgctgtcccaggggccggcgtgcccgcagcgtgg
gtggagagctgctcctgtccagcaggctacgaggggcagttctgtgagcgctgctcccct
gggtaccgccgagaaacccccggcctggggccctacagcccctgcgtgccttgcacctgc
aatgggcacagcgagacctgtgatcctgagacgggcatgtgcgactgcagggataacacg
gcaggctctcactgcgagaagtgcagcgatgggtactacggggatgcgacagcgggcaca
gccttggactgccagccctgcccctgccccggcggctccagctgtgccgtcgtgccccgc
acaaaggaggttgtgtgcaccagctgccagacaggcaccaccggcaagaggtgtgagctg
tgtgatgatgcctattttggagacccactgggtgaaaatggggctgtgaggccgtgccgc
ctgtgccagtgcaacgacaacattgatcccaacgctgtgggcaactgcaaccggcagacg
ggggagtgcctcaagtgcatctacaacacagccggcttctactgcgaccgctgcaaggac
ggcttctttgggaaccccctggccaccaaccctgctgacaagtgccgggcttgtcactgt
aatccctacggcaccgtgaatcagcagacgagctgcaaccaagtgacggggcagtgcgag
tgcctctcccacgtcaccgagagggactgcagcgcctgcgagcccggcttcttcaacctg
cagagcggccgaggctgtgagaggtgtgactgccacgcgctgggctccaccaatggccaa
tgtgacatatggacagggcagtgtgagtgccagcccggcgtcaccggccagcgctgcgac
cgctgcgaggccaaccactttggattcggccctgagggctgcaaaccatgcgactgtgac
ccagagggctcacgtgccctgcagtgccgtgaggatgggcgctgtgagtgcaaggagggc
tttgtggggagccgctgcgaccagtgtgaggagaactacttctacaacaggtcgtggccg
ggctgccaggagtgccctgcgtgttacagattagtgaaagataaggtggcagagcaacga
gagaggctacgggagctggaaaacctgatagcaaatctgggcacaggagaagaaactatc
actgatcaagccttcgaggagaggttgaagcaggcagaaagagatgttatggagctgctc
cgagaagcacagaacagcaaagacgtagatcagggtctcatggatcgtctcagagacatc
aacagcactttgacaagtcagctcagcaggctgaggaacatccagaacacggtgcaggag
acagagaacctggcagagcaagcccggggccgggtggaggacacagaggacctgattgca
atggcttctgatatgctggagaaggcaaagatggcagctggcaacgtgtccattacaccc
ccggagtcgagcagtgaccccaacaacatgactctattggcagaagaggcgcgccggctg
gctgagaggcacaaacaagaagctgatgagatcgttcgcattgccaaggcagccaacgat
acttccacagaagcgtatcagctgctgctgaagaccctggctggggaaaaccaaacagca
cgtgacattgatgagctcaaccagaaatataaccaagcaagaaacatttctcgagatcta
gagagacaggccaaccgtgtgcttgaggaggcagaggaagctggaaataaggccctccag
atctatgctaatctcaccaatctgcccactgtggacaccacggggctggagaatgaagca
aataagatcaagaaggaagcagaggagttagatcagttaatagcaaggaagttgaaggac
tatgaagacttgagggaagacatgaagggaaaggagctggaagtcaagaacctcttggag
aaagggaagacggagcagcagactgcagaccagctcttggctcgagcagatgcagcaaaa
gccctggctgaggaagctgctcggaagggcaatggcacactgcaggaggccaacaccatt
ctcagcaacctgaaagatttcgataagcgggtgaacgacaacaagacagcagctgaggag
gcgctgaagaagatccctgccattacccagaccattgctgaagccaacaacaagacccgc
caggcagagctggcgcttggcaacgctgctgctgatgcccgtgaagccaaaactagagca
gatgatgctgagaaaattgccagcgctgttcagaagagtgccgctgctaccagagcagaa
gcggacaagaccttctctgacgtgacggggctggccagagaggtggatgacatgatgaag
cagctccaggaggctgaaaaagagctgaagcgtaaacaagatgatgctgatcaagatatg
atgatggcaggcatggcctcacaggcagcccaggaggcagaagacaacgcaagaaaagcg
aaaaactctgtgaacagcttgcttgctgtcattaatgaccttttagaccaactagggcaa
ctggagacggtggacctgaacaaactgaatgagattgagggtaccctgaacagtgccaaa
gaccagatgaaagatagcgacctggaccagaaggtagctttccttgagagagaagccagg
aagcaagatgatgcgatacagtcctacaacagggacattgaggaaatcctgaaagacatt
agcaacctggaggacatcaggaagaccttgccatctggctgctttaacaccccgtccatt
gagaaaccctaa

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