KEGG   Gallus gallus (chicken): 769169
Entry
769169            CDS       T01006                                 
Symbol
ALYREF
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
gga  Gallus gallus (chicken)
Pathway
gga03013  Nucleocytoplasmic transport
gga03015  mRNA surveillance pathway
gga03040  Spliceosome
gga05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:gga00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    769169 (ALYREF)
  09122 Translation
   03013 Nucleocytoplasmic transport
    769169 (ALYREF)
   03015 mRNA surveillance pathway
    769169 (ALYREF)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    769169 (ALYREF)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gga03019]
    769169 (ALYREF)
   03041 Spliceosome [BR:gga03041]
    769169 (ALYREF)
Messenger RNA biogenesis [BR:gga03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     769169 (ALYREF)
    TREX complex
     769169 (ALYREF)
Spliceosome [BR:gga03041]
 Complex C
  Other components
   EJC/TREX
    769169 (ALYREF)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    769169 (ALYREF)
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_occluded
Other DBs
NCBI-GeneID: 769169
NCBI-ProteinID: NP_001264836
CGNC: 5467
Ensembl: ENSGALG00000007237
UniProt: E1C2L5
Position
18:complement(9938407..9943202)
AA seq 255 aa
MADKMDMSLDDIIKLNRSQRGGGRGGGRGGRGRGGVTRGGGPGRGGVGAGRAGGGPVRNR
PVMARGGGRNRPAPYSRPKQLPEKWQHDLFDSGFGAGAGVETGGKLLVSNLDFGVSDADI
QELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT
SQIDTQRRPAQSVNRGGMTRNRGGSGGFGGGGTRRGSRGGSRGRGRGAGRTSKQQLSAEE
LDAQLDAYNARMDTS
NT seq 768 nt   +upstreamnt  +downstreamnt
atggccgacaagatggacatgtccctggacgatatcattaagctcaaccgaagccagcgc
ggcggcggccggggcggcggccggggcggccggggccgaggcggcgtcacccgtgggggc
gggcccggtcggggcggcgtgggagccgggcgagcgggcggcggccccgtgcggaacagg
ccggtgatggcccggggcggcggcaggaatcggcccgcgccgtacagccggccgaaacag
ctccccgagaagtggcagcacgacctcttcgacagcggttttggggcgggcgctggtgtg
gagaccggcgggaagctgctcgtctccaacttggacttcggcgtctcagatgcggatatc
caggaactctttgcagaatttgggaccttgaagaaggcggcagtgcactacgacagatct
ggacgcagtctagggacagcagatgtgcattttgaaagaaaagcagatgctctgaaagct
atgaagcagtacaatggagtccccttggatgggcgccccatgaacattcagctggttaca
tcacagatagacacacagaggagaccagcacagagtgtaaacagaggtggcatgaccaga
aaccgtggtggttcaggaggatttggtggtggaggtaccaggcgaggtagtcgtggcggg
agcagagggagaggcagaggggctggaagaacttccaaacagcagctctctgcagaagaa
ctagatgcacagctggatgcttacaatgccaggatggacaccagctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (25)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   CGNC (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (21)   
   RefSeq(nuc) (1)   
   GenBank (10)   
   EMBL (10)   
Protein domain (3)   
   Pfam (3)   
All databases (59)   

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