KEGG   Geobacillus sp. GHH01: GHH_c12280
Entry
GHH_c12280        CDS       T02455                                 
Symbol
ymcB
Name
(GenBank) tRNA-i(6)A37 modification enzyme
  KO
K06168  tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]
Organism
ggh  Geobacillus sp. GHH01
Brite
KEGG Orthology (KO) [BR:ggh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ggh03016]
    GHH_c12280 (ymcB)
Enzymes [BR:ggh01000]
 2. Transferases
  2.8  Transferring sulfur-containing groups
   2.8.4  Transferring alkylthio groups
    2.8.4.3  tRNA-2-methylthio-N6-dimethylallyladenosine synthase
     GHH_c12280 (ymcB)
Transfer RNA biogenesis [BR:ggh03016]
 Prokaryotic type
  tRNA modification factors
   Methylthiotransferases
    GHH_c12280 (ymcB)
SSDB
Motif
Pfam: Radical_SAM UPF0004 TRAM TRAM_2 Dor1
Other DBs
NCBI-ProteinID: AGE21766
UniProt: L7ZYG6
Position
1201267..1202862
AA seq 531 aa
MNEKQRLEQTGQIKTESHPADRKSALDRLKEKTTKDYEKYFTSVFLPPNLKEAKKRGKEE
VKYVKDFAIPEEFRGMGRGRKFYIRTYGCQMNEHDTEVMAGIFMALGYEPTDRPEEANVI
LLNTCAIRENAENKVFGELGYLKPLKTTNPDLLLGVCGCMSQEESVVKKILKQYQYVDLI
FGTHNIHRLPYILHEAYMSKEMVVEVWSKEGDVVENLPKVRKGKIKAWVNIMYGCDKFCT
YCIVPYTRGKERSRRPEDIIQEVRQLAAQGYKEITLLGQNVNAYGKDFTDIQYGLGDLMD
ELRKIDIARIRFTTSHPRDFDDRLIEVLAKRGNLVEHIHLPVQSGSTEILKMMGRKYTRE
EYLELVRKIKAAIPDVALTTDIIVGFPNETDEQFEETLSLYREVEFDSAYTFIYSPREGT
PAANMKDNVPMEVKKERLKRLNDLVQEIAAKKMKQYEGQVVEVLVEGESKTNPDVLAGYT
RKNKLVHFVGPKSLIGQLVNVRITQAKTWTLTGELVNEAIEVNEHGKIYAG
NT seq 1596 nt   +upstreamnt  +downstreamnt
atgaacgaaaaacaacgtttggagcaaacgggacaaatcaaaaccgaaagccatccagcg
gacagaaaatccgccttggaccggctgaaagaaaaaacgacgaaagactatgagaaatat
ttcacgagcgtgtttctcccgccgaatttaaaagaggcgaagaaacgcggcaaagaggaa
gtcaagtacgtcaaagactttgcgattcctgaagagtttcgcggcatggggcgcggacgg
aagttttacatccgcacgtatggctgtcaaatgaacgagcacgatacggaagtgatggcc
ggcattttcatggcgctcggctatgagccgaccgaccgtccggaagaggcaaacgtcatt
ttgctcaacacgtgcgcgatccgtgaaaacgcggaaaacaaagtgtttggcgagctcggc
tacttaaagccgctcaaaacgacgaacccggacttattgctcggcgtgtgcggctgtatg
tcgcaagaagaatcggttgtcaagaaaattttaaagcaataccaatacgtcgaccttatt
ttcggcacgcacaacatccatcgcctgccgtacattttgcatgaggcgtacatgtcgaaa
gaaatggtcgtcgaagtatggtcgaaagagggcgacgttgttgaaaacttgccgaaagtg
cgcaaagggaagattaaagcatgggtcaacattatgtacggctgtgacaagttttgcacg
tactgcatcgttccgtacacgcgcggcaaagagcgaagccgccgtccggaagacatcatc
caagaagtgcgccagctcgccgcccaaggctataaagaaattacgctccttgggcaaaac
gtcaacgcttacggaaaagatttcaccgacatccagtacggccttggcgatttaatggat
gagctgcgcaaaattgacattgcgcgcatccgcttcacaacgagccatccgcgcgacttt
gacgaccggctcatcgaagtgctcgccaaacgcggcaacttggttgagcatatccatttg
ccggtgcaatcgggcagcacggaaattttaaaaatgatgggccgcaaatatacgcgcgag
gagtacttggagctcgttcgcaaaatcaaagccgccattccggatgtcgcgttgacgacg
gatattatcgtcggcttcccgaacgagacggacgagcagtttgaagaaacgctgtcgctt
taccgtgaagtcgaatttgactctgcctacacgttcatctattcaccgcgcgaaggcacg
ccggcggcgaacatgaaggacaacgtgccgatggaagtgaaaaaagagcggctcaagcgt
ctcaacgaccttgttcaagaaatcgcggccaagaaaatgaagcaatacgaagggcaagtc
gtcgaagtgcttgtggaaggcgaaagcaaaacgaatccggatgtattggcgggttatacg
cgcaaaaacaagctcgtccacttcgtcggccccaaatcgctcattggccaattggtcaac
gtgcgcattacgcaggcaaagacgtggacgctgacgggcgagctagtcaatgaagcgatc
gaggtgaacgaacatggcaaaatatacgcgggatga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (4)   
   KEGG ENZYME (1)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (25)   

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