KEGG   Gossypium hirsutum (upland cotton): 107886254
Entry
107886254         CDS       T04793                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03020  RNA polymerase
ghi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107886254
  09124 Replication and repair
   03420 Nucleotide excision repair
    107886254
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107886254
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107886254
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     107886254
  RNA polymerase III system
   RNA polymerase III
     107886254
  RNA polymerase I system
   RNA polymerase I
     107886254
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      107886254
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N Mrr_cat
Other DBs
NCBI-GeneID: 107886254
NCBI-ProteinID: XP_016665626
UniProt: A0A1U8HHN8
Position
A03:complement(15660183..15664879)
AA seq 208 aa
MSVSEEQNTKLFKARRTVVQMLRDRGYSVPDSDIKMTRQQFIEKYGENVHLKRDDLLILC
SKGDAPTDQIYVFFPAEVKVGVPMVRNCAKRMKADNVYNAILVVQRALTAPAKAAINEIN
SYFHMEVFEEAELLTNITEHMFVPKHTVLTNQEKKELLEKYRVKETQLPRILVSDPVAKY
YGMKRGQVVKITRQSVTADTYDTYRYAV
NT seq 627 nt   +upstreamnt  +downstreamnt
atgtcggtttctgaggaacaaaacacgaagctattcaaagcacgtagaacagtagtgcaa
atgctgagggataggggatattcagtccctgattcggacattaaaatgacaagacaacaa
ttcattgagaaatatggtgagaatgtccatctcaaaagggatgatcttttaatcctttgc
agcaaaggagatgctccaactgatcagatttatgtcttctttcctgcagaagtaaaggtt
ggtgttcctatggtaagaaactgcgcaaagcgtatgaaagcagataatgtttataatgct
attttggtcgttcaaagagctttgacagcccctgcaaaagcagcgataaatgaaattaat
tcatacttccacatggaagtttttgaggaggcagagttgttgacaaatatcacagaacat
atgtttgtcccaaagcacacggtactgacaaatcaagaaaagaaggaattgctggaaaaa
tacagggtaaaggaaacacagctacctcggattctggttagtgatccagttgccaaatat
tacggtatgaagcggggacaagtggtgaagattactcgacaaagtgtgactgctgacacg
tatgatacttaccgatatgctgtatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system