KEGG   Gossypium hirsutum (upland cotton): 107887059
Entry
107887059         CDS       T04793                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 51
  KO
K13179  ATP-dependent RNA helicase DDX18/HAS1 [EC:5.6.2.7]
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ghi03041]
    107887059
   03009 Ribosome biogenesis [BR:ghi03009]
    107887059
Enzymes [BR:ghi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     107887059
Spliceosome [BR:ghi03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    107887059
Ribosome biogenesis [BR:ghi03009]
 Eukaryotic type
  90S particles
   Helicases
    107887059
  Pre-60S particles
    107887059
SSDB
Motif
Pfam: DEAD Helicase_C DUF4217
Other DBs
NCBI-GeneID: 107887059
NCBI-ProteinID: XP_040949776
Position
A03:23420669..23427562
AA seq 622 aa
MAVLEEKNPKSPSFEDSKKKRKRKRSRVKKSEPEITDNKTDREEGEENEEFEQENYEEDE
TETREVEIDEKKKMKMKKKKKKNKKVKGEDGEKQEKGTDDEEEEKQATDEEGKKEEIKDR
MNSGGSGIMSTESFESLGLSEPTFKAIKEMGFQYMTQIQARAIPPLMIGKDVLGAARTGS
GKTLAFLVPAVELLYNVRFTPRNGTGVIIICPTRELAIQTHAVAKDLLKYHSQTLGLVIG
GSARRGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKTLKCLMIDEADRILEANFEEEM
KQIIKYLPKENRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRKKVTNEGLQQGYCV
VHSSKRFILLYSFLKRNLSKKVMVFFSSCNSVKFHAELLRYIHVDCLDIHGKQKQQKRTT
TFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGAKGNA
LLFLIPEELQFLRYLKAAKVPVKEYEFDEKKLANVQSHLEKLVANNYYLNKSAKDAYRSY
ILAYNSHSMKDIFNVHRLDLQAVAGSFCFSCPPKVNLNIDSNASKFRKKMRKVEGGAQNN
FSESNPYGRQRSEDDNRQFVRY
NT seq 1869 nt   +upstreamnt  +downstreamnt
atggcggtactggaagagaaaaaccctaaatctccctcttttgaagatagcaagaagaaa
aggaagcgaaagcggagcagagttaagaaatcggagcccgaaatcactgataacaaaacg
gatagagaagagggtgaagagaacgaagaatttgaacaagagaactacgaggaagatgaa
acggaaacgagggaagttgaaattgacgagaaaaagaaaatgaagatgaagaagaagaag
aagaaaaataagaaagtgaagggtgaagatggtgagaaacaagaaaagggaactgatgac
gaagaagaagaaaaacaagctactgatgaagaagggaaaaaggaagagataaaggataga
atgaacagtgggggaagtgggataatgagcactgagtcatttgagtccttgggattgtct
gagccaacttttaaagctattaaagagatgggttttcagtatatgactcagattcaagca
agagctattccaccacttatgattggcaaagatgttcttggggctgcaagaacgggttct
gggaaaacccttgctttcttggtacctgctgttgagttgctatataatgttcgattcact
cctcgtaatggaacaggtgttatcattatctgtcccacaagagagcttgccattcagact
catgcggtagcaaaggatcttctcaaataccactctcagacccttggattggttattggt
ggttcagctagaaggggagaagcagagcggattgtgaagggagtaaatttgttagtggcc
acacctggtcggcttcttgaccatcttcaaaataccaagggattcatttacaaaactttg
aagtgtctcatgattgatgaagctgaccggatattggaagcgaattttgaggaagaaatg
aaacaaattatcaagtatctacctaaggaaaataggcaaactgctctattttcagctacc
cagactaagaaggttgaggaccttgctcggttgtcatttcagacaactcctatttatatt
gatgtagatgatgggcgaaagaaggtcaccaatgaagggctgcagcaaggctattgtgtt
gtgcatagttcgaagagatttatccttttgtattcatttttgaagaggaacctttcgaag
aaagtgatggtctttttctcttcatgcaactcagtcaagtttcatgccgagcttcttaga
tatattcatgtggattgccttgatatccatggaaagcagaagcagcaaaagcgaaccact
accttcttcgacttttgtaaagcagaaaagggcattttgctctgcactgatgttgcggcc
cgtggacttgatattcctgctgtggattggattgtgcagtacgatcctcctgatgaaccc
aaggaatatattcatagggttggtcgaactgcccgtggggaaggtgcaaaaggaaatgcg
cttcttttcctgatcccagaggaactgcagtttctacgctatttaaaggctgccaaagtt
ccagttaaggaatacgagtttgatgagaaaaagctggcgaatgtgcagtctcatctggaa
aaattggtggcaaacaactattatctaaacaagtcggctaaggatgcgtatcgatcctac
attttagcatacaattcacactctatgaaagatatcttcaacgtgcaccgccttgatctg
caggctgttgctggatccttctgtttttcatgccctccaaaggttaatctgaacatagac
agtaatgcatccaaatttcgaaagaaaatgcgtaaagttgaaggtggagcacagaacaat
ttcagtgaaagcaatccttacgggaggcagagaagcgaagatgataatcggcaatttgta
aggtattag

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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