KEGG   Gossypium hirsutum (upland cotton): 107893353
Entry
107893353         CDS       T04793                                 
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like isoform X1
  KO
K07466  replication factor A1
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03030  DNA replication
ghi03420  Nucleotide excision repair
ghi03430  Mismatch repair
ghi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107893353
   03420 Nucleotide excision repair
    107893353
   03430 Mismatch repair
    107893353
   03440 Homologous recombination
    107893353
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ghi03000]
    107893353
   03032 DNA replication proteins [BR:ghi03032]
    107893353
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107893353
Transcription factors [BR:ghi03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    107893353
DNA replication proteins [BR:ghi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    107893353
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     107893353
   MMR (mismatch excision repair)
     107893353
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     107893353
SSDB
Motif
Pfam: Rep_fac-A_C Rep-A_N REPA_OB_2 tRNA_anti-codon
Other DBs
NCBI-GeneID: 107893353
NCBI-ProteinID: XP_016673803
UniProt: A0A1U8IBZ1
Position
A13:106894656..106897900
AA seq 629 aa
MPVNLTRNAIAMMNSGDVNSKPLVQVVDIKLIGNSQERYRFLLSDSESTQHAMLATQLNE
QVRTGRVKKGSIIQLIDYICSTVQNRRIIVVLNMETIIPEYEIIGNPKLLMGSEPEANKS
MPNNNLFEPSTRSTNNRYSAPAPANKAQSFQPTIQPAYQPPPNYKIQGPIMKNEAPARII
PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR
FYNVIEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESNSTVELCPDEDGSIPRQQFSFR
PITEIESAENNSILDVIGIVISVNPSVPILRKNGMETQRRILNLKDVSGKSVELTLWGDF
CNKEGQKLQEMVDSGLFPVLAVKAGKVNDFNGKSIGTISSTQLFIDPDCPEAQGLRAWFE
SGGRNTASISISKEIMPGGSKNEIRKTLTQIKDEGLGRSDKPDWVTAKATVVFIKTDNFC
YTACPLMIGDRQCNKKVTQSGNKRWLCDRCNQEFEECDYRYLLQVQIQDHTGLTWVTAFQ
EAGEEILGCSAKEMYLLKYELQDDTRFGEIIRSRLFHQYLFRLKIKEELYGDEQRVKITV
VKVDKVNYSAESRYLLDMVTKNLRNRKQF
NT seq 1890 nt   +upstreamnt  +downstreamnt
atgccggtgaatctcacgcgcaacgcgattgccatgatgaacagcggcgatgttaactcc
aagccgttggttcaggtggtggatattaagctgattggcaactctcaggagaggtaccgg
tttttgttatccgattctgaatcaactcagcacgcaatgctcgccactcagctcaatgaa
caagtcaggaccggacgagtcaagaaaggatctatcatccagttgatcgattacatttgc
agcactgtccaaaatcgtaggattattgttgtgctgaatatggagactataattccagag
tatgaaataatcgggaatcctaaacttcttatgggttctgagcccgaagctaacaagtca
atgcctaataacaatttgtttgagccttctacgaggtccaccaataatagatatagcgcc
ccagctcctgctaataaggcccagagttttcagccaactattcaacctgcataccagcca
cctccaaattacaaaattcagggcccaataatgaagaatgaagcaccagcacgcattatt
cctattgctgctctaaatccttatcaaggacgttgggctatcaaggctcgagtgactgca
aaaggggaccttcgtcgctacaacaatgctagaggagatgggaaggtcttctcctttgac
ctccttgactctgatggaggggaaatacgagtaacttgcttcaacgctgttgttgatcgc
ttctacaatgttattgaagttggtaaagtttacttgatttcaaagggtagcttgaaaccc
gcgcaaaagaatttcaaccatttgaagaatgagtgggagatattcttggaatcaaattca
accgtggagctttgccctgatgaagatggctctattccaagacaacagttctccttcaga
cctatcactgaaattgagagtgctgaaaacaattctatacttgatgttatcggtattgtg
atatctgttaacccttcagttcctattttgaggaagaatggtatggaaactcagagaagg
attctgaatttaaaggatgtatctggaaagagtgttgagctaaccctttggggtgatttc
tgcaacaaggaaggtcaaaagctgcaagaaatggtcgattctgggcttttcccagttttg
gcggttaaagctggaaaggtcaatgactttaatgggaagtccattggcactatttcttcc
acacagctctttatagatccagattgtccagaggcacagggcctgagagcgtggtttgaa
agtggggggagaaatacagcttctatctcaatttctaaagaaattatgcctggaggatcc
aaaaatgagatacgtaaaaccttgactcagatcaaggacgaaggtctcggaagatctgat
aagccagattgggtcacagccaaggcgactgtagttttcattaaaacagataatttctgt
tatacagcctgcccattgatgattggagatagacaatgcaataagaaagtaacacaatcc
ggtaataaaagatggctttgtgaccgttgcaaccaagaattcgaggaatgtgattacaga
tatcttctccaggtccagattcaagaccatacaggactcacttgggtaacagctttccag
gaagctggcgaagaaatcttgggatgctcggcaaaggaaatgtatttattgaaatatgaa
ttgcaggacgatacccgattcggtgaaataattcgcagccgactctttcaccaatatttg
tttaggcttaaaataaaagaggaactctatggtgacgagcagagggtaaaaatcactgtg
gtgaaggttgacaaggtgaactactctgcagaaagcaggtaccttctcgatatggttaca
aagaatttgcggaatagaaaacaattctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (22)   

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