KEGG   Gossypium hirsutum (upland cotton): 107894694
Entry
107894694         CDS       T04793                                 
Name
(RefSeq) cyclin-H1-1-like
  KO
K06634  cyclin H
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03022  Basal transcription factors
ghi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    107894694
  09124 Replication and repair
   03420 Nucleotide excision repair
    107894694
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107894694
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107894694
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     107894694
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     107894694
SSDB
Motif
Pfam: Cyclin_N TFIIB RB_B
Other DBs
NCBI-GeneID: 107894694
NCBI-ProteinID: XP_040940529
Position
A13:5356458..5359377
AA seq 193 aa
MADFHTSTHRANWIFSPQELVEKYKAANQRAIQALEKYGTTQMEVDADGSLSYPEPIERD
NADKHSRPKPLNIEEEQFMRVFYENKLREVCSAFYFPNKIQATALIYFKRFYLQWSVMEH
HPKHIMLTCVYAACKIEENHVSAEELGKGISQDHQMILNYEMIVSQSLEFDLIVYAPYHS
VEGFVNDMEKLHL
NT seq 582 nt   +upstreamnt  +downstreamnt
atggctgattttcatacatcgactcatagagctaactggatcttctcgcctcaagaactg
gttgagaaatacaaggctgcaaatcaaagagcaatacaagcactggagaagtatgggaca
acacaaatggaagtagacgctgatggttcactatcataccctgaacctattgaaagagat
aatgctgacaagcattctcgtccaaaacctcttaacattgaagaagaacagttcatgcga
gtgttttatgagaacaaacttcgagaagtttgtagtgcattctactttcctaataaaatt
caggcaactgctctaatttatttcaaaaggttttacctgcaatggtcggtcatggaacat
catccaaaacatataatgttaacctgtgtgtatgcggcctgtaagatagaagaaaatcat
gtgtcagcagaggagcttggtaaggggatttcacaggatcatcaaatgattctcaattac
gagatgatagtgtctcagagtctggaatttgatctcattgtttatgcaccctatcattca
gttgaaggttttgtcaatgacatggagaagcttcacctgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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