KEGG   Gossypium hirsutum (upland cotton): 107897098
Entry
107897098         CDS       T04793                                 
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein NUP85-like
  KO
K14304  nuclear pore complex protein Nup85
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    107897098
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107897098
   03036 Chromosome and associated proteins [BR:ghi03036]
    107897098
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     107897098
Chromosome and associated proteins [BR:ghi03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    107897098
SSDB
Motif
Pfam: Nucleopor_Nup85
Other DBs
NCBI-GeneID: 107897098
NCBI-ProteinID: XP_016677927
UniProt: A0A1U8IIF8
Position
A06:32676949..32681612
AA seq 715 aa
MPGVSSDSARGALVPLSPESPGAVVYPLRHGLKSPISRLSISWSRGNSLRVSVFAAPSSD
GSVNDGDGGKVVEVKLGGGDGEISEAHWRRIAYGSVSPFALLQSRKNAVSSLSKMSMNSS
PYDGDWWDYIMEYSKDINALLVNQKSASVPVLDDTKSVITKGEEPTSLKAAWELLEMFYA
EKPSHSWLPERLVDWLADYDSLFSGTHPTVHSKLVDFQKEFVNLQVVEDDPKYWEVMSSA
LAVGWLNIVVKMLRLHGSYQLDQLSNRETENGLVEAVAVLISKMPRMRLEQEAGKLGECY
KAKPDFVKAWEKWRGQINKLDSSAFWFQCAHQQTREGLRSMLQIMLGNANSLCSATYNWI
ELYISHFLYMRPLTVGLESMYSLAQKSIQLKPMASAHRLMGLIIGILGENTEVVLAECLK
GFGPWMVAHAIELLTAGSDHAEMLLHEERXELGGISIEELHRLVYAQVLSSFPLTWQIAP
IYLISCMKHGMILLQILLSKQPVQDNQLLLKSIEICRLYELHSVTSNIMKIAGVHHWKHG
RKGSGVFWLQQARDEYRLNRIALQLFDSVGKTISDESFKQWEGLIQLLGSDSKTAGGLEF
LHKYRDFKKSLRQIHDGKATDPARQAVESLISLMKNPSTPQRFWLPLLYDSLKLLNWKER
PLLNVSQTNLLLNKLQELSMARLRPDFIESELPPQALNSVRLALGTNLGRAILEE
NT seq 2148 nt   +upstreamnt  +downstreamnt
atgcccggcgtctcttctgattccgcccgcggcgctttggttccactttcacccgagtcc
ccgggcgcggtggtgtatcctctccgccatggtctcaagtctccaatctctagactctcc
atctcatggtcacgcggtaactccctccgagtctcggttttcgccgctccttcttccgat
ggctccgtcaatgatggtgacggaggaaaagtagtggaagtgaagctcggcggcggagac
ggcgagatcagcgaggctcattggcggaggatcgcctacggttcggtctctccttttgct
ctactccaaagcaggaaaaatgctgtctccagcttgtccaaaatgtccatgaattcttca
ccttacgatggtgactggtgggattacataatggagtacagcaaggacataaatgccctt
ctagttaatcagaaatcggcttcagttccggttctcgatgacacgaagtcagtcataact
aaaggagaggaaccaactagtttgaaggctgcgtgggagctattggaaatgttttatgca
gaaaagccatctcattcatggttacccgaacgccttgttgattggttagctgattacgat
agccttttctctggaacacacccgacagtccactcaaagcttgttgattttcaaaaagaa
tttgttaacttgcaggttgtggaggatgatcccaaatattgggaagttatgtcatctgca
cttgctgttggttggctgaatatcgtagttaaaatgttgcgcttgcacggttcttatcaa
ttagatcaactcagcaatcgtgagacagagaatggtcttgtggaggcagttgccgttctt
atttcaaaaatgccacgcatgcgtttggaacaagaagctgggaaattgggtgaatgctat
aaggccaagcctgattttgtaaaggcatgggagaaatggcggggtcagataaataagctg
gattctagtgcattctggtttcagtgtgctcaccagcagactcgggagggcttgagaagt
atgttacaaataatgctgggtaatgctaatagtctctgctctgcaacatataactggata
gagctgtatatttctcacttcctatacatgaggccattaacagtggggttagaaagcatg
tacagcttggcacagaaaagcattcaattgaaaccaatggcttctgcacataggttgatg
gggcttataattggaattcttggggaaaatactgaggttgtattagcagaatgcttgaaa
ggatttggtccttggatggttgcgcatgccatagagttgttgactgctgggagtgaccat
gcagaaatgcttttacatgaagagcgtncagaacttgggggaataagcatagaggagctt
catcgacttgtttatgctcaagtcctatcttcatttccattaacttggcaaattgctcca
atttatcttatatcatgcatgaagcacgggatgattctgttacagatattattgtccaag
caacctgttcaagataatcagttattgctgaagagcatagagatttgccgcctttatgaa
ctccatagtgtaacttcaaatattatgaagattgctggagtacaccactggaagcatggt
cggaaaggttctggagtcttttggcttcagcaagctcgggatgaatatcgtcttaatagg
atagctctgcaattgtttgattcagttggaaaaacaatctctgatgagagtttcaagcaa
tgggaaggtttaattcagttattgggttcagattctaagactgctggtggactagagttc
ctacacaaatacagagatttcaagaaatctcttcggcagattcatgacggaaaggctaca
gatcctgctcggcaagctgtggaatctctcatatcacttatgaaaaacccttctacgcct
caacgcttttggctgccacttctttatgattcgttgaagctgcttaattggaaggaacgt
cctttgttgaatgtgtctcagacaaatcttctattaaataaactacaagaattgtccatg
gcaaggcttcggccggactttattgaatctgagttaccaccccaggccttgaactctgtt
agactagctcttggcacgaatcttggacgtgcaatcctagaggaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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