KEGG   Gossypium hirsutum (upland cotton): 107900113
Entry
107900113         CDS       T04793                                 
Name
(RefSeq) eukaryotic initiation factor 4A-3
  KO
K13025  ATP-dependent RNA helicase [EC:3.6.4.13]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03013  Nucleocytoplasmic transport
ghi03015  mRNA surveillance pathway
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107900113
  09122 Translation
   03013 Nucleocytoplasmic transport
    107900113
   03015 mRNA surveillance pathway
    107900113
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107900113
   03041 Spliceosome [BR:ghi03041]
    107900113
   03009 Ribosome biogenesis [BR:ghi03009]
    107900113
   03012 Translation factors [BR:ghi03012]
    107900113
Enzymes [BR:ghi01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     107900113
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     107900113
   mRNA cycle factors
    Stress granule specific factors
     107900113
Spliceosome [BR:ghi03041]
 Complex C
  Other components
   EJC/TREX
    107900113
Ribosome biogenesis [BR:ghi03009]
 Eukaryotic type
  90S particles
   Helicases
    107900113
Translation factors [BR:ghi03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    107900113
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_30 Helicase_RecD AAA_22
Other DBs
NCBI-GeneID: 107900113
NCBI-ProteinID: XP_016681309
UniProt: A0A1U8IZD1
Position
A01:complement(1374793..1377573)
AA seq 405 aa
MAAATTSRTARRMGAEDEKLVFETTEGIEPILSFDQMGLKDDLLRGIYNYGFEKPSAIQQ
RAVMPIINGRDVIAQAQSGTGKTSMIALTVCQVVDTASREVQALILSPTRELASQTEKVI
RTIGDFMNIQAHACIGGKSVGEDIRKLENGVHVVSGTPGRVCDMIKRRTLRTRAIKLLIL
DESDEMLSRGFKDQIYDVYRHLPPELQVCLISATLPHEILEMTSKFMTDPIRILVKRDEL
TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSS
MHGDMPQKEREAIMAEFRDGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIG
RSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq 1218 nt   +upstreamnt  +downstreamnt
atggcggcggcgacgacgagcagaacggctcggcggatgggagccgaggatgagaagcta
gtgttcgagacgacggaaggaatcgagccgatattgagtttcgaccagatggggttaaaa
gacgatctcctccgtggaatctacaattacggctttgaaaagccgtcggctattcagcag
agagctgttatgccgataatcaatggccgcgatgtgattgctcaagcccaatctggtacc
ggtaaaacttccatgattgctctcactgtttgtcaagtggtcgacaccgctagcagagag
gttcaagcgttgatattgtcacctacaagagaactggcttctcaaacagagaaagtgata
cggacaattggtgatttcatgaatatacaagcacacgcatgtattggaggcaaaagtgtg
ggtgaagatataaggaagctagaaaacggggttcatgtagtatcgggaactccaggtaga
gtctgtgatatgatcaagaggagaaccctacgtacaagagctattaaactattgattctg
gatgaatctgatgagatgttaagcagagggttcaaagatcaaatttatgatgtttacaga
catcttccacccgagcttcaggtttgtttgatatctgctacacttcctcatgaaatcttg
gaaatgacgagcaaatttatgactgatcctataaggatccttgtgaagcgtgatgagttg
actctagagggaatcaagcagttttttgtagcagttgaaagagaggagtggaagtttgat
acgctatgtgatctttatgatacattgacaatcacccaagctgtcattttctgcaacaca
aaacgaaaggttgattggctaactgagaagatgcgtagcaataactttacggtatcgtca
atgcatggggatatgcctcagaaggaaagagaggcaattatggcagagtttcgggatggt
gcaacccgtgttcttatcacaacagatgtctgggctagggggctcgatgttcaacaggtt
tccctggtgataaattatgacctcccaaataatcgagagctttacatccataggatcggt
cgatcaggtcgttttggaagaaagggtgttgctataaattttgtgaaaagtgatgacatc
aagattcttcgagatatcgagcagtactatagtacccagatcgacgaaatgccgatgaat
gtcgctgatcttatataa

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