KEGG   Gossypium hirsutum (upland cotton): 107904655
Entry
107904655         CDS       T04793                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X2
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:3.6.4.13]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107904655
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107904655
Enzymes [BR:ghi01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     107904655
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     107904655
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD dsrm HA2_N AAA_22 AAA_19 nSTAND3 T2SSE ATPase Dicer_dimer AAA_16 AAA_30 PhoH AAA_11
Other DBs
NCBI-GeneID: 107904655
NCBI-ProteinID: XP_016686590
UniProt: A0A1U8J8B7
Position
D11:complement(500898..509998)
AA seq 914 aa
MESPEGQKMLEFRRSLPAYKERDALLNAISQNQVVVVSGETGCGKTTQLPQYILESEIEA
ARGASCSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGI
LLRRLLVDRDLRGVSHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAELF
SSYYGGAPTIHIPGFTYPVRAHFLENILEMSGYRLTPYNQIDDYGQEKMWKMQKQAQSFK
KRKSQLTSAVEDVLEDADFRGCSLRTRESLSCWNPDSIGFNLIEHVLCHIVRKERPGAVL
VFMTGWDDINSLKGQLQAHPLLGDPSKVLLLACHGSMPSSEQRLIFEKPEDGVRKIVLAT
NMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGEC
YHLYPKCVYDTFADYQLPELLRTPLQSLCLQIKSLELGGITEFLSRALQPPELLSVQNAV
EYLKIIGALDENENLTVLGCNLSMLPVEPKLGKMLILGAIFNCLDPIMTVVAGLSVRDPF
LMPFDKKDLAETAKAQFAGQEYSDHIAVIRAYEGWKEAEREQSGYEYCWKNFLSAQTLKA
IHSLRKQFFYLLKDAGLVDQNVENCNKWSHDEHLVRAVICAGLFPGICSVVNKEKSIAMK
TMEDGQVLLHSNSVNAEVPKVPYPWLVFNEKVKVNAVFLRDSTGVSDSILLLFGGNISRG
GLDGHLKMLGGYLEFFMKPALAVMYLSVKRELEELIQRKLLDPTLDMHSSNELLSAVRLL
VSEDRCEGRFVFGRQVTLSSKKTATVKTPGKSEADNSKNHLQTVLTRAGHGPPTYKTKQL
KNNQFRSTVIFNGLDFVGQPCSSKKLAEKDAAAQALLWLRGEDHSTSRDIDHASLLLKKS
KSRRKTSVSDAKWS
NT seq 2745 nt   +upstreamnt  +downstreamnt
atggagtctcctgaaggccaaaagatgcttgaatttcgtagaagcttgcctgcatataaa
gagagagatgcattgctaaatgctatctcacagaatcaggtggttgttgtctctggcgaa
actggttgtggtaaaaccacacaacttcctcagtacatattagaatctgagattgaagct
gctcgtggagcttcctgtagtattatatgtactcagcctagaagaatatctgctatggct
gtttctgaaagagttgctgctgaaagaggggagaaattgggagaatctgtcggctataaa
gtacgccttgagggaatgaaagggagagacactcgcctccttttttgtacaactggcatt
ttacttaggcgactacttgttgacagagatttgagaggtgtaagtcatgttattgttgat
gagattcatgaacgaggaatgaatgaagattttcttcttattgtgttgaaagatctcctt
ccacgtcggccagagttgaggttgattttgatgagtgcaaccttaaatgctgaactcttt
tcttcttactatggtggtgccccaacaatccatattcctggttttacatatcctgtacga
gcacattttctggagaatattctagagatgagtggatacaggttaactccatataatcaa
attgatgattatggtcaagaaaagatgtggaaaatgcagaagcaggcccaatcttttaaa
aagaggaagagtcagctaacttctgctgttgaggatgtgcttgaagatgctgatttcagg
ggatgtagtttacgcacacgagaatctttgtcctgttggaatcctgactcaattggcttc
aatctcattgagcatgttctttgccacatagtgaggaaagagaggcctggtgctgttttg
gttttcatgactggttgggatgacataaattctctaaaaggtcagcttcaggctcatcct
ctcctaggtgaccctagcaaggtgttgttgcttgcatgccatggttccatgcctagctct
gagcagaggttaatatttgaaaagccagaagatggagtgaggaaaatagttctagctact
aatatggctgagactagcatcaccatcaatgatgtggtttttgtggttgattgtggaaag
gcaaaagaaacatcctatgatgcattaaataatactccttgtttgcttccatcttggata
tcaaaggctgctgcccggcaaagaaggggaagagctggtcgtgttcaacctggcgagtgt
taccatctttatcccaaatgtgtttacgatacttttgctgattatcaacttccagagctt
ttaaggacaccattgcagtctttatgtttgcaaatcaaaagtctagagcttggaggtatc
accgagttcctttctagggcattgcagcctccggaacttctgtcggtacaaaatgctgtt
gaatatctgaagattattggagctttagatgaaaacgagaatttgacagtgctaggatgc
aacttgtcaatgcttccggttgagcctaaacttggaaaaatgctgatactgggagctatt
ttcaactgtttggatccaataatgactgttgttgctgggctcagtgtccgtgatccattc
ctgatgccatttgataagaaggatcttgctgaaacggcaaaagcccaattcgctggccag
gaatacagtgatcatattgcagttatccgagcctatgagggttggaaagaagctgaaagg
gagcagtctggttatgagtattgttggaagaattttctttctgcacaaactctcaaggct
attcactctctacgaaagcagttcttctatttgctcaaggatgctggtctagttgatcaa
aatgtagaaaactgcaataagtggagccacgatgaacatcttgtcagggcagttatttgt
gctggcttgtttccagggatatgctctgttgtgaacaaagagaagtcaattgcaatgaaa
acaatggaggatggtcaagttcttttacactcgaattcggtgaatgctgaagttcccaaa
gttccatacccttggctggttttcaatgaaaaggtaaaagtgaatgcagtattcctccgc
gattcaactggtgtttctgattccatactgctcttatttggagggaacatctctagaggt
ggactagatggacatctgaagatgttgggaggatatttggagttcttcatgaaacctgct
ttagctgttatgtatttaagcgtgaaaagagagctagaagaactaattcagaggaaactt
ttggatcctacattagacatgcattctagcaatgagctcctctcggcagtaagattgctg
gtctcagaagatcgatgtgaaggtagatttgtctttggccgtcaggtgacattgtcttca
aagaagacggccactgttaaaacaccaggtaaaagcgaggctgataattcgaagaatcat
ctgcaaacagtacttaccagggctggacatggaccacccacttacaagacaaagcaacta
aagaacaaccagttccgatctacagtcatctttaatgggctggattttgttgggcagcct
tgtagcagcaagaaacttgcagaaaaggatgcagctgctcaggctttactgtggttgagg
ggtgaagaccattcaacttcccgagatattgaccatgcctcattgcttcttaaaaagagc
aaaagccggaggaaaacttcagtcagtgatgctaagtggagttaa

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