KEGG   Gossypium hirsutum (upland cotton): 107909774
Entry
107909774         CDS       T04793                                 
Name
(RefSeq) exosome complex component RRP41 homolog
  KO
K11600  exosome complex component RRP41
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107909774
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107909774
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     107909774
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     107909774
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 107909774
NCBI-ProteinID: XP_016692911
UniProt: A0A1U8JRL8
Position
A11:complement(9368235..9370943)
AA seq 241 aa
MEYVSPEGLRLDGRRPMEMRQLRAEIGTVAKANGSAVFEMGNTKVIAAVYGPREVQNRSQ
QINDQALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACILTHLMPRSQIDIF
VQVLQADGGTRSACINAATLALADAGIPMRDIVTSCSAGYLNSTPLLDLNYIEDSAGGPD
VTVGILPKLDKVTLLQMDAKLPVDIFENVMGLAIEGCKAIANYIREVLLENTKQLEYRRG
L
NT seq 726 nt   +upstreamnt  +downstreamnt
atggaatacgtgagccctgaaggtctccgcttggatggccgccgtccgatggaaatgaga
cagcttcgtgcagagatcggtaccgtcgccaaagctaatggttctgctgtttttgagatg
ggcaacaccaaagtcattgcagctgtgtatggccctagagaggtgcaaaataggagccaa
caaattaatgaccaggcactggtgcgctgtgaatatagcatggctaatttcagtaccgga
gatcgcatgagaaaaccaaagggtgacagacggtcaacagagatatctcttgtcatccgt
caaaccatggaggcatgcattttgactcatctaatgcctcgttctcagatagatatattt
gttcaagttcttcaggctgatggaggaactagatctgcatgcatcaacgctgcaacttta
gcccttgcagatgctgggatcccaatgcgagatatcgtcacttcttgcagtgctgggtat
ctaaatagcactcctttgctagatttgaactatattgaagatagtgctggaggtcctgat
gtcactgtagggatcttacctaagttggacaaagtgactcttcttcagatggatgctaag
ttacctgtggatatctttgaaaatgtgatgggacttgcaatcgaaggctgcaaggccata
gcaaactacattagagaagtattactagagaataccaagcaactggagtatcgccggggt
ctataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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