KEGG   Gossypium hirsutum (upland cotton): 107909825
Entry
107909825         CDS       T04793                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X2
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:5.6.2.6]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107909825
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ghi03041]
    107909825
Spliceosome [BR:ghi03041]
 Complex C
  Other components
   Step II factors
    107909825
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C HA2_N HA2_C Complex1_49kDa
Other DBs
NCBI-GeneID: 107909825
NCBI-ProteinID: XP_016692982
UniProt: A0A1U8JRS7
Position
D02:57545154..57553060
AA seq 561 aa
MKRLVKRRASNLKVLITSATLDGEKVSKFFSDCPLLTVPGKLFPVEIFYSKERPTSYLES
SLKTAMDIHVREPEGDILIFMTGQDDIEKLVSKLEDKVRSLEEGSCMDAIILPLHGSLPP
EMQVRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDSGYVKQRQYNPATGMYSLDVVQ
ISKVQANQRAGRAGRTRPGKCYRLYPSRVYNDDFLDVTVPEIQRSSLAGSVLYLKSLDLP
DIDILKFDFLDPPSTESLEDALKQLYLIDAIDENGSITSIGRTMAELPLEPSLSRTLIEA
NEYGCLSQALTVAAMLSAETNLLPGRSKNNEKKRKYPPLELPDGSGFGDHIQLLQIYECW
DENDYDIGWCKDYDLQVRGMMFVKEVRKQLSQIMQKIAKGSSDVQVNQSQKRRQSYRNLM
KALSIGFASQLAERMRHHNGFRTLGFKPQLVQVHPSSVLKPDDDGLYPNYVVYHELIATS
RPYMRNVCAVERQWVIPILEKLDKLDVRKLSGGGLGHVEEITEGNTPDLLKKEAVIVTAP
EEQESKIQAARERFLARKGKK
NT seq 1686 nt   +upstreamnt  +downstreamnt
atgaaacgcttggttaaaagacgtgcatccaatttaaaagttctgatcacatcggcaacc
cttgatggtgaaaaagtgtcgaagttcttttcagattgtcccttgttgactgtccctgga
aaattatttcctgtggaaatattctacagcaaggagcgacctacaagctatcttgagtct
tcactaaaaacagctatggatatacatgttcgggaaccagaaggtgacatcttaatattc
atgactggacaggatgatatagagaagttggtatcaaagctggaagataaagttcgaagt
ctagaggaaggctcctgcatggatgctatcattcttcctctccatggttcattgccacct
gaaatgcaggtgcgtgtattcagtcctccccctccaaactgtaggcgttttattgttgcc
acaaacatagctgaaacttctttgacagttgatggtgttgtgtatgttattgattctggt
tacgtgaagcaacggcaatataacccagcaactggaatgtattcccttgatgttgttcaa
attagcaaggtacaagctaatcaacgtgctggacgagctggaagaacacgtcctgggaag
tgttaccgtttatacccatccagggtttacaatgatgatttccttgatgtaacagttcct
gaaatacagcgatcttctcttgctggcagtgttctttatctaaagtcattggacctccct
gatattgatattctgaagtttgattttcttgaccccccttctaccgagtcattagaagat
gctctaaagcaactatatctgattgatgccattgatgaaaatggatcgataactagtatt
gggcgaacaatggccgagctcccattggaaccttcactttcgagaaccttaattgaggca
aatgaatatggttgcttatcccaggctctgactgttgcggccatgttatcagccgaaaca
aatttgcttcctggtcgaagcaagaataatgagaagaaaagaaaataccctcctttggaa
cttcctgatggttctggttttggtgatcacatccagttgttacagatctatgaatgctgg
gatgaaaatgattacgatattggttggtgcaaagattatgacttacaggtgcgaggaatg
atgtttgtcaaagaagttcgaaagcagctatcgcagataatgcagaagatagcaaaaggg
tcctcagatgtacaagtaaatcaaagtcagaaaagacgccagagttataggaatttgatg
aaagcattgtccattggctttgcaagtcagcttgctgagcggatgaggcatcataatggc
tttcgaacactgggttttaagccccaactagtgcaggtgcatccttcctctgtgctaaag
ccagatgatgatggattatatccaaattatgttgtctaccacgaacttattgctacctca
cgcccatatatgcggaatgtgtgtgctgtagagcgtcagtgggtgattccaattttagag
aaacttgacaaacttgatgtcaggaaattaagtggtggtggattgggtcatgtagaagag
ataactgagggaaacacgccagacttgctgaagaaggaagctgtcatcgttacagctcca
gaagagcaggaaagtaaaattcaggcagcaagggaacgttttcttgctcgcaagggaaag
aaatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (8)   
   RefSeq(nuc) (4)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (25)   

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