KEGG   Gossypium hirsutum (upland cotton): 107913609
Entry
107913609         CDS       T04793                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03030  DNA replication
ghi03410  Base excision repair
ghi03420  Nucleotide excision repair
ghi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    107913609
   03410 Base excision repair
    107913609
   03420 Nucleotide excision repair
    107913609
   03430 Mismatch repair
    107913609
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ghi03032]
    107913609
   03036 Chromosome and associated proteins [BR:ghi03036]
    107913609
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107913609
DNA replication proteins [BR:ghi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    107913609
  DNA Replication Termination Factors
   ELG1-RFC complex
    107913609
Chromosome and associated proteins [BR:ghi03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    107913609
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     107913609
  Check point factors
   HRAD17(Rad24)-RFC complex
    107913609
SSDB
Motif
Pfam: DNA_pol3_delta2 AAA Rad17 DNA_pol3_delta Sigma54_activ_2 AAA_22 Mg_chelatase ABC_tran DUF815 AAA_23 RuvB_N AAA_5 AAA_29 RsgA_GTPase Bac_DnaA AAA_16 AAA_24 AAA_2 T2SSE nSTAND1 nSTAND3 TsaE
Other DBs
NCBI-GeneID: 107913609
NCBI-ProteinID: XP_016697746
UniProt: A0A1U8K5F5
Position
D11:51201604..51205779
AA seq 354 aa
MLWVDKYRPKTLAQVVVHEDIAQNLTKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQIFG
PSAEKVKVENRNWKIDAGSRTIDLELTTLASTNHVELSPSDVGLQDRYIVQEIIKEMAKN
RPIDTKGKKGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSR
CLNIRINAPSAEQIVKVLEFIGKKEGLQIPSGFAARIAEKSNRNLRRAILSFETCRVQQY
PFTSNQAIPPMDWEEYISEIATDIMKEQSPKRLFQVRGKVYELLINCIPPEIVLKRLLHE
LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKAFLIATFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggttgataaatatcgacccaaaaccctagctcaagtcgttgttcatgaagac
attgcccaaaatctaacaaaactggttacagagcaagattgcccgcatttactcttctat
ggaccatctgggtctggcaagaaaaccctaatcatggcccttcttagacaaatatttggt
cccagtgctgaaaaggtgaaagtggagaataggaattggaaaattgatgctggaagtaga
accattgatcttgagttgaccacattagcaagcacgaaccatgtggagttgagtccaagt
gatgtaggcttgcaggacagatatatagttcaagagattattaaagaaatggctaaaaat
agacccattgacacaaaagggaaaaagggatttaaagtgctagtactcaatgaagttgac
aagctttctagagaagctcagcattctctccgtagaacaatggagaagtacagtgcttct
tgccggctaattttgtgctgtaatagttcttcaaaagtcactgaggcgattcgatctcgc
tgtctgaatatccgaataaatgcaccttcagcagaacagattgttaaggtgttggagttc
attggaaagaaagaagggctgcaaattccatctggttttgcagcccgcattgctgaaaag
tcaaaccggaatttaaggagagctatattgtcatttgagacttgccgtgttcaacagtat
ccttttacaagcaaccaagcaattccaccaatggattgggaagaatatatatcagaaata
gcaactgacataatgaaggaacagagtcctaaaaggctgtttcaggttagaggcaaggtg
tatgaattgctcatcaattgcatccctccagagattgtcttgaagaggctcctccatgaa
ctattgaagaaattggatgcagagctaaagcatgaggtttgccattgggctgcatattat
gagcataggatgcgtcttggacagaaagccatctttcacattgaagcatttgttgccaaa
ttcatgagcatttacaaggctttcctgattgcaacatttggctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (22)   
   Pfam (22)   
All databases (40)   

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