KEGG   Gossypium hirsutum (upland cotton): 107914407
Entry
107914407         CDS       T04793                                 
Name
(RefSeq) exosome complex component RRP4 homolog
  KO
K03679  exosome complex component RRP4
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107914407
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107914407
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     107914407
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     107914407
SSDB
Motif
Pfam: RRP4_S1 KH_6 ECR1_N RRP40_S1 EXOSC1
Other DBs
NCBI-GeneID: 107914407
NCBI-ProteinID: XP_016698805
UniProt: A0A1U8K8J2
Position
D10:15643825..15647557
AA seq 321 aa
MRGLQLPLSQTQRIRLQRALEKLQSLSCKANSDASVTVADTIPVNYEDAFLKGHGTTDLN
GDLVATVCGVVERINKLVYVRALRARYKPEVGDIVVGRVVEVSQKRWRLEINFSLDAILM
LSSMNMPDGIQRRRTALDELNMRCIFEENDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG
QLLIVDPYLVKKSKQHFHHLEQFGIDLILGHNGFIWVGEHVEARDSMVVDQANSSEQSRV
PEEKNQTHTPLEMRQNICRIANAVRVLSTLGFSIDADLILETVELSSTVKIDIHDMLGSE
FHVLVAEREAERRSLMGKRKR
NT seq 966 nt   +upstreamnt  +downstreamnt
atgagaggattacagctgcccttgagccaaacgcaaagaatacgacttcaaagagcattg
gaaaagcttcagtctctttcttgtaaggccaattccgacgcttccgttaccgtcgccgat
accattcccgtcaactacgaagacgcttttctcaaagggcatgggacaacggacctaaat
ggcgatttggtggcaactgtgtgtggcgtggtggagcgcatcaacaaactggtctatgta
cgcgctttacgcgctaggtacaagcctgaggttggggatatcgtagtgggacgtgtagtt
gaggtttctcaaaagcgatggagattggagataaatttcagcctagacgccattttaatg
ctttcctccatgaacatgcctgatggtattcagaggcggcgtactgctttggatgaactc
aacatgcgttgtatttttgaagagaacgatgttgtctgtgctgaggttcgtaatttccag
catgatggcagcttgcaactccaagcaagaagtcaaaagtatgggaagcttgagaagggt
caattgctcatagttgatccttacctagtgaagaaaagcaaacagcatttccatcacctt
gaacagtttggaattgacctgatactcggacataatggattcatatgggttggtgaacat
gttgaagccagagacagtatggtagtggatcaagctaatagttctgaacaatccagggtt
cctgaagaaaaaaaccaaactcatacccctctagagatgaggcagaacatatgcagaatt
gcgaatgctgttcgtgtgctgtcaactttaggtttcagtatcgatgcagatttgatcctg
gagacagttgagttgagcagcacagtgaaaattgacatacatgacatgctaggctcagag
tttcatgttttggttgcggaaagggaagctgagcggagaagcttgatgggaaagcggaaa
agatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (22)   

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