KEGG   Gossypium hirsutum (upland cotton): 107919919
Entry
107919919         CDS       T04793                                 
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
  KO
K14326  regulator of nonsense transcripts 1 [EC:3.6.4.13 5.6.2.3]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03013  Nucleocytoplasmic transport
ghi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    107919919
   03015 mRNA surveillance pathway
    107919919
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107919919
Enzymes [BR:ghi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     107919919
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     107919919
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     107919919
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase DEAD UvrD-helicase Helicase_RecD nSTAND3 Viral_helicase1 PhoH AAA_16 SRP54 ATPase AAA_22 AAA_32 AAA AAA_25
Other DBs
NCBI-GeneID: 107919919
NCBI-ProteinID: XP_016704850
UniProt: A0A1U8KQY7
Position
A08:112944180..112954550
AA seq 1260 aa
MDSQFETASQPDPATDAYTFLEFNTQGESDFEYTDFRDPIRSWPTPSDAHSAERSGSDHH
SDTAASSSPSSASKGAGRGVASNNNSHSNSISNSAAVVDALATGIGGLNFEETVGDEDGG
YDYGKGDFAEHSCRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRSKHKEV
CLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLSQ
WCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDE
PQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVFP
KEDNELRLVPGDELRLRYSGDAAHPAWQAVGHVIKLTAQEEVALELRASQGVPIDVNHGF
SVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLP
ELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ
LAEKISTTGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGEL
SSSDEKKYKALKRATEREISQSADVICCTCVGAADPRLANFRFRQVLIDESTQATEPECL
IPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPC
LSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNR
TEAANVEKIVTILRVFSCQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQ
GREKDYIIVSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLT
HYKENECLVEGPLNNLKQSMVQFQKPKKIYNERRLFFGGGPGILPNDNFGDASSSPNVDR
RSSRARGTYMPSGPPNGTHKPGVHPTGFPMPRVPLPPFPGSPSQPYAIPSRGAVHGPVGA
VPQVPQPGSRGFGVGRGNASAPIGHHLPHQQGSQQNVGTIGSPFNFPPLENPNSQPSVGG
PLSQPGFVNNMPVQGASQTIRDGFSMGGMSQDFLGEDFKSQGSHVPYNIADFSTQGGYAV
DYASQGAQSGFPGNFLNQNSQAGYSRFGAGNDFMTQDYMNHGSQGLFTQAGFNDPSQDDA
SQSHFGAANPNQLQSQGLMNSLYSQPFAHYNTQPLNLQSPQQQQPQQGQGSQNQNLRYNG
NT seq 3783 nt   +upstreamnt  +downstreamnt
atggattctcaattcgagacggcctcgcaacctgacccagccaccgacgcttacaccttc
ctcgaattcaacacccaaggtgagtccgatttcgagtacacggacttccgtgatccgatt
cgttcatggccgacaccctccgacgcccactccgccgaacgatccggctccgaccaccac
tcggacactgctgcttcctcttctccctctagcgcttcgaaaggcgctggccgtggcgta
gcgagcaataacaacagccatagcaatagtattagcaatagtgcggccgtggtcgatgcg
ttagccacggggatcggtggattgaattttgaggagacagtcggggatgaggatggcggg
tatgactacggaaaaggagatttcgccgagcactcttgtcggtattgtggggtttcaaac
ccggcttgcgtggttcgctgtaatgtcccttcgtgtaggaagtggttttgtaattcaaga
gggaatacatccggctcgcatattgttaatcatctcgtgagatccaaacacaaggaagtc
tgccttcataaggatagtcctttgggagaaacaattcttgaatgctacaactgtggatgc
agaaatgtttttcttcttggttttatatctgctaagacagagagtgttgtcgttcttctt
tgtagagaaccttgtttgaatgtcaatgctttgaaggacatgaattgggatttgagtcag
tggtgtccccttattgatgataggtgctttctgcagtggttggttaagatcccttctgaa
caagaacagttaagggctcgacaaataagtgctcaacaaataaacaaggtggaagagctt
tggaagacaaatcccgatgcctcctttgaagatcttgagaagcctggtgtagatgatgaa
cctcagcctgtggcattgaagtatgaagatgcttatcagtatcaaaatgttttcgcacca
cttattaagcttgaagctgactatgataaaatgatgaaagaatctcaaagcaaggacaat
gtcacagttcgttgggatatcgggctaaacaagaaacgaattgcatattttgtctttcca
aaggaagacaatgaactccgtctggtacctggtgatgagttgcgactgcgttattcagga
gatgctgcacatccagcgtggcaggctgttgggcatgtgatcaagctaacggcgcaagag
gaggttgcacttgagcttcgtgctagtcagggagttcctattgatgtgaaccatgggttt
agcgttgattttgtatggaaaagtacaagttttgaccgaatgcagggggcaatgaaaaca
tttgcagttgatgaaacaagtgttagtggatatatttaccatcaccttctcggccatgaa
gttgaggttcagatggttcgtaatacactgcctcgtcgttttggtgcacctggtctgcca
gaattgaatgcatctcaagtttttgcagtgaagagtgttcttcagaagcctataagcttg
attcaaggcccccctggcacaggaaaaactgtgacttctgccgccattgtctatcacatg
gccaaacaggggcaggggcaggttctggtctgtgctccaagtaatgtggctgtcgatcag
ctagctgaaaagataagcacaactgggttaaaggttgtaaggctttgtgcaaagtctaga
gaagctgtcagttctcctgttgaacatttgaccttgcattatcaggtccgacatcttgat
acatctgagaagagtgaacttcataagttacaacaattgaaagatgaacaaggtgagttg
tcaagcagtgatgagaaaaagtacaaagcattgaagcgagcaacagagagggaaatatca
caaagtgctgatgtcatttgttgcacttgtgttggggctgcagatcccagacttgccaat
tttaggttccgccaggtacttattgatgagtctactcaggcaacagaacctgagtgtctc
attcctttagttcttggagtgaagcaggttgtccttgttggtgatcattgccaacttggt
cctgttataatgtgcaagaaagcagctcgtgctgggctggcgcaatctctttttgaacgt
ctagttttacttggtgttaaacctattagattgcaggttcaataccgtatgcacccatgt
ttgtcagagtttccttctaacagtttctatgaaggcacattgcaaaatggagtgacaatc
aatgaaaggcaatcatcaggcattgatttcccttggcctgtgcctaatcgtcccatgttt
ttctatgtacagatgggacaagaggagattagtgctagtggaacatcatatctcaatcga
actgaggctgcaaatgttgaaaagatagttaccatcttgagagtgttttcctgtcagatt
ggggtcataacaccttatgagggacaacgggcatatattgtgaactatatgtcaagaaat
ggttctttgaggcagcagctttacaaggaaattgaggttgcaagtgttgactcattccaa
ggacgggaaaaggattacatcattgtttcttgtgtgagaagtaatgaacatcagggtatt
ggctttctaaatgaccctcgaaggcttaatgtcgccctaacacgtgctcgatatggtatt
gtaattcttggaaaccctaaagttcttagcaaacagcctctgtggaatggtttattgaca
cattacaaggaaaatgagtgtctggttgaaggacccctcaataacttgaagcagagtatg
gttcaattccaaaagcccaaaaagatctacaatgaacggaggctgttctttggtggtgga
cctggcattctacctaatgataattttggggatgcctcatctagtccaaacgttgataga
agaagcagccgtgcccggggtacttatatgccttctggtccacccaatggtacacataag
cctggagtgcatcctactgggttcccaatgccccgggttcctcttccaccatttccgggc
tctccttctcagccttatgctattccatcccgtggagctgtacatggaccagtgggagct
gttcctcaagtccctcaaccaggaagtcgaggctttggggttggtcggggtaacgctagt
gctcctattggccatcatctcccacatcagcaaggctcacagcaaaatgtcggtactatc
ggatctccctttaacttccctcctctggagaacccaaatagccagccatctgtaggtggt
ccgttatctcaacctggatttgttaacaatatgcccgtccaaggggcaagccagacaatt
cgtgatggattttcaatgggaggaatgtcccaggacttcttgggtgaggacttcaaaagc
caaggctcacatgttccttataacattgctgatttttcaacacagggtggctatgcggtt
gattatgcttcacaaggagctcagagtgggtttccagggaacttcctaaaccagaattct
caagctgggtattctcgttttggtgctggaaatgatttcatgactcaggactacatgaat
catggatcacaaggcctgtttactcaggctggctttaatgatccttcacaagatgatgca
tcacagagccactttggtgcggctaatcccaaccagcttcagtctcagggtttgatgaac
tctctctactcccagccctttgcacactacaacacacagccactaaacttgcagtctcct
caacagcagcaaccacagcagggccagggttcccaaaaccagaatcttcgctataatggt
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (21)   
   Pfam (21)   
All databases (36)   

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