KEGG   Gossypium hirsutum (upland cotton): 107923904
Entry
107923904         CDS       T04793                                 
Name
(RefSeq) serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform
  KO
K03456  serine/threonine-protein phosphatase 2A regulatory subunit A
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    107923904
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ghi01009]
    107923904
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107923904
   03036 Chromosome and associated proteins [BR:ghi03036]
    107923904
Protein phosphatases and associated proteins [BR:ghi01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-2 (PP2A)
    Regulatory subunits
     107923904
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Protein phosphatase 2A
     107923904
Chromosome and associated proteins [BR:ghi03036]
 Eukaryotic type
  Centromeric chromatin formation proteins
   Other centromeric chromatin formation proteins
    PP2A (protein phosphatase 2A)
     107923904
SSDB
Motif
Pfam: HEAT HEAT_2 Vac14_Fab1_bd Htt_N-HEAT_1 PDS5 HEAT_EZ Adaptin_N CLASP_N Cnd1
Other DBs
NCBI-GeneID: 107923904
NCBI-ProteinID: XP_016709578
UniProt: A0A1U8L864
Position
A11:564778..572438
AA seq 586 aa
MSMIEEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
DEVLLAMAEELGVFIPYVGGVEYANVLLPPLETLCTVEETCVRDKAVESLCRIGAQMREQ
DLVEYFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPEALKTELRAIYSQLCQDDMPMVR
RSAATNLGKFAATVEAPHLKVDIMSMFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA
HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSELVPAYVRLLRDNEAEVRIAA
AGKVTKFCRILNPELAIQHILPCVKELSTDSSQHVRSALASVIMGMAPVLGKDATIEQLL
PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV
LDMINNPHYLYRMTILHAISLLAPVMGSDITCSKLLPVVINASKDRVPNIKFNVAKVLQS
LIPIVDQSVVEKTIRPCLVELSEDPDVDVRFFATQALESCNQVMMS
NT seq 1761 nt   +upstreamnt  +downstreamnt
atgtcaatgattgaagagcctttgtatcccattgcggtgttgattgatgagctcaagaat
gaagatatccagcttcgtttgaactcgattcgtagactttctacgattgcacgtgcactt
ggggaagaaaggactcggaaggaattgattccgtttctgagtgagaataatgatgacgac
gatgaagttctacttgctatggcagaagaattgggggtttttattccttatgttggaggt
gtggaatatgctaatgtattgttacctccattggagactctttgcactgttgaggaaact
tgtgtgagggataaggctgtggagtcattgtgtagaattggtgcgcagatgagggagcag
gacttggttgagtattttattccactagtgaagagattggctgctggtgagtggtttaca
gctcgagtttcctcatgtggattgtttcatattgcataccctagtgccccggaggcacta
aaaactgaattaagagcgatatacagtcagctttgccaagatgacatgccaatggttagg
agatctgctgcgaccaatcttggaaaatttgctgctactgtagaagcacctcatttgaag
gtggacatcatgtctatgtttgatgatttgacacaggatgatcaagattctgttcgccta
ttggctgttgagggttgtgcagcacttggaaagttgttggaaccccaagattgtgtagca
catattctccctgttatagttaatttctcacaggataagtcttggcgtgttcgttacatg
gtcgcaaatcaattatacgagctgtgtgaagctgtcggacctgagcctactaggtcggaa
ctagtacctgcttatgttcgcctacttcgtgataatgaagctgaagtgcggatagctgct
gctggaaaagtaactaagttttgccgaattctgaatccagaattagctattcagcacatt
cttccttgtgtcaaggaactatcaacagattcatcccagcatgttcgatctgctttggcc
tcagttataatgggaatggcacctgttttagggaaggatgcgaccatagagcaattgctt
ccaatatttctttctcttctgaaagatgaatttccagatgtccgactgaacatcattagc
aagcttgatcaagtcaaccaggtgattggaattgatctgctgtcccagtccctattacca
gcaattgtggagcttgcagaggatagacactggagggttcggcttgcgataatagaatac
atccctttattggcaagtcagttgggtgttggctttttcgatgacaaacttggtgcactc
tgcatgcaatggttgaaagataaggtttattccattcgtgatgctgctgctaataacgtg
aagcgcctggctgaagaatttggaccagattgggcaatgcagcatatagttccacaggtt
ttagacatgattaacaatcctcattatctgtatcggatgaccattctacatgcaatttct
ctacttgcccccgttatgggctcagatattacttgctcaaaacttctccctgtggttatc
aatgcttcaaaagatagggtacccaacatcaagtttaatgtggccaaggtgctgcagtca
cttattcctattgttgatcaatctgtggtggagaagacaatccgtccatgcttagttgaa
ttgagtgaggatcctgatgtggatgtgaggtttttcgccacccaagccctagagtcatgc
aatcaggtcatgatgtcttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (9)   
   Pfam (9)   
All databases (26)   

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