KEGG   Gossypium hirsutum (upland cotton): 107926978
Entry
107926978         CDS       T04793                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1-like isoform X2
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107926978
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107926978
Enzymes [BR:ghi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     107926978
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     107926978
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 107926978
NCBI-ProteinID: XP_016713417
UniProt: A0A1U8LFL4
Position
A08:complement(117315826..117327764)
AA seq 1481 aa
MASMESDSSEGQENSTAFLTGIKFHVSNDADNENMSILEITAPSEVSDPRLGFPNFSNHC
TTCDARDMKQCEGHFGVIKFPYTILHPFFLSEVVHILNKICPGCKSIRKDLWMKGANSIA
RLLETKGCKYCVGNSIEWYPPMRFKITSKELFRKSAIMVEVSENSLMKVRKRGRQALPAD
YWDFIPKDQQQEEGFVKPGRRVLSHAQVRHLLKDVDPEFIKKFISEADSIFLNCFPVTPN
SHRVTEIMHTSSNAQRLIFDERTRVYKKLVDFRGLANELSSHVLECLKISKLHVEKPSTE
DSALIAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAE
KLQIAEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYRPLNDG
DTVLINRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTR
VELSELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSP
LPAIVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSDVVIHNGDLICSSEGSTWLRDADG
NLFQSLIKHYQGKILDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPDSDSQKNMMDEIFYG
LQEAEQTCNFKQLMVDSCQDFLAGNDEETNRFMVLDVEQMCYEKQRSAALSQASVDSFKQ
VFRDIQNLLYKYANKENSLFTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRFPHQLSC
AAWNNQKSHILTQKVDDTDESAKKYIPYAVVESSFVKGLNPLECFVHSVTTRDTSFSDNA
DLPGTLSRRLMFFMRDLCTAYDGTVRNAYGDQVVQFCYNTNKGRFSPTSCPDKLVSQGNS
LPDGIGGQPVGSLSACAISEAAYSALDQPISLLESSPLLNLKRVLECGSKRSNADQTMSL
FLSGKLVSRRHGQEYGALEVKNHLERLIFKDIVSTVSIIFSPQMSSENRFSPWVCHFHVF
KDIVKRRRLTVHSIIDALHMHCTNAKRLWKINLPDMQVTSKACSIIDMESEDDTFCITVT
IVECKTSRIELDVIEDMVIPSLLEAVVKGFPEIKKVEILWNEEIRVPNSHKSAPGELYLR
VSVSGDFGITKLWSVLMNDCLQLMDIIDWTRSHPDNINQFCLAFGIDAGWRFFLNNMKSA
ISDTGKSILNEHLHLAANCLSATGEFVGLNSKGLKQQREHAFVSSPFMQACFSNPSACFV
KAAKTGVADNLQGTIDLLAWGRVPHIGTGGQFDIVYSMKDEELAEPVDVYKLLGDSINSK
KQDIEFEIPKVFNSTSEKHSSSFKGALRDSVFDEWKKIETKTRSLLRGRLTLNDVQRLER
NLKNILRKYPIDHRVSEADWDTLMMALYFHPHRVEKIGSGAKEIKVGHHPDHADSRCFFL
VRTDETTVDFSYRKCVVGALEIIAPRRAQSYKSKWLQHGSL
NT seq 4446 nt   +upstreamnt  +downstreamnt
atggcctccatggaaagtgactcatctgaagggcaagaaaattcaactgcctttctcact
ggcataaaatttcatgtctcgaacgatgctgataatgagaacatgtctatcttggaaatt
actgcacccagtgaggtgtctgatcctaggttggggtttccgaatttttctaatcattgc
accacttgtgatgccagagatatgaaacaatgtgaaggccattttggggttattaaattt
ccatacacaatactccatccattttttctttcagaagttgtacatatattaaataagatt
tgtccaggatgtaaatcgatccggaaagatctatggatgaagggtgccaattctatagcc
agattacttgaaacgaaggggtgtaaatattgtgttgggaattcaatagagtggtatcca
cccatgagattcaagataacctcgaaagagcttttcagaaaaagtgcaatcatggtagag
gtaagtgaaaattctttaatgaaggtccggaagagaggaaggcaagcattacctgcagat
tactgggactttattccaaaagatcaacaacaagaagaaggttttgtgaaaccaggtaga
agagtcctatcacatgcccaggttcgacatttgttgaaggacgttgatccagagttcatt
aaaaagtttatttcagaagcagactctattttcctcaattgttttcctgtgacacccaat
agtcaccgagtgacagaaatcatgcatacatcttctaatgcgcagcgattgatctttgat
gaaagaaccagggtttacaagaaactggttgatttcagagggctagcaaatgaattgagc
tctcatgtattggaatgcctaaaaatttctaagctgcatgtggagaagccatcaactgaa
gattctgcactcattgctgctctgaaaaagaataaagattctgcttccaacatgtcaggt
ttaagatatatgaaagatgttattcttgggaagagaaatgatcattgcttccgcatggtt
cttactggaaacccaaatcttaaactgtctgagattggtatcccatgtcatgttgccgag
aaattgcaaatcgctgagcaactgaacaggtggaatgaggagagattgaaaacttgttgt
aatctgcgtattcttgagaagggtgagattcgcattaggagagaaggtaaattagttaga
attcgtcataatgaaaaggtccaagtaggggacactatctataggcccctaaatgatggg
gatacagtacttataaatagacctccttctatacatcaacactctctcattgcactatct
gttaaagttctacctgtcaattcagttgtttcgataaacccactaatatgttcccctttt
cgtggagattttgatggtgattgccttcatggttatgttcctcagtccattaacacaagg
gttgagctcagtgagcttgtttctttggataggcagctaattaatggccaaagtggtcga
aatctgctttcactcagtcatgatagtttaacggctgcttatttggtcaaggaggatggg
gtactattgaacctgttccagatgcaacagctggaaatgttctgtcctaatcattcaccg
ttgccagcgattgtcaaagctcctttgctaagtaatcctgtttggactggaaagcagtta
tttagcatgctctttcctcccgaatttgattatgtttttgcaccaagtgatgttgtaatc
cacaatggggatctcatatgttcttctgaagggtctacttggctacgagatgctgacggc
aaccttttccaaagtcttattaagcattaccaaggaaagatccttgactttttgcatgct
gctcaggaagttctttgtgagtggttgtcaatgaggggtttgagtgtttcactcttggac
ctatatctatctcctgactcagattcacaaaagaacatgatggatgaaatcttctatggt
ctgcaagaagcagagcagacatgtaacttcaagcagttaatggttgattcttgtcaagat
ttccttgctggaaacgatgaagaaactaataggttcatggttttggatgttgagcagatg
tgctatgagaaacaaagatctgctgcacttagccaagcttctgttgattcatttaagcaa
gttttccgtgatattcagaatttactctacaagtatgcaaataaagagaattcattattc
accatgttcaaagcagggagcaagggtaacttgctgaagttagtacagcatagtatgtgt
cttggattgcaacattcacttgtccctttatcattcagatttcctcatcagctctcatgt
gctgcatggaataatcaaaagtctcacatcttaacccaaaaggttgatgatactgatgag
tctgctaagaaatatatcccctatgctgtggtcgaaagttcgtttgtgaagggtctgaat
ccattagaatgttttgttcattcagtgactactcgagacacatctttcagtgacaatgct
gaccttcctgggacgctgtcacgaaggttgatgttcttcatgcgtgatctatgcacagca
tatgatggaactgtgaggaatgcatatggggatcaggttgttcagttctgttataatacc
aataagggtagatttagtccaactagttgccctgacaaattagtaagtcagggcaatagt
cttcctgatggaataggtggacaacctgttggttcattatctgcctgtgccatttctgag
gctgcatatagtgcattggatcagccaattagtctacttgaatcttctccattgctgaac
ctgaagagggtccttgagtgtggttctaaaagaagcaatgctgaccagactatgtcacta
tttttatctggtaaacttgtaagtagaaggcacggtcaggagtatggagccttagaagtc
aagaatcatttggagaggctgatctttaaagatattgtgtctactgtctcaataatcttc
tctccacagatgtctagtgaaaaccgtttcagtccttgggtttgccattttcatgtgttt
aaggatattgtgaaaaggaggcggcttacagtgcattctattattgatgctcttcacatg
cactgcaccaatgccaaaagactatggaaaatcaatttgcctgacatgcaagttacaagc
aaggcttgttctattattgacatggaaagtgaagatgatacgttttgtatcactgttaca
attgttgaatgtaaaacttctcgtatagaactggatgtgattgaagacatggtgatacct
tcccttctggaagcagtggtaaaaggattcccggagatcaagaaggtggaaattttatgg
aatgaggaaatcagagtcccaaattctcataaatctgctcctggtgaactttacttgagg
gtttctgtatctggcgattttggtataactaaactctggagtgtgcttatgaatgattgc
ctccaactaatggatataatcgattggacacggagccatccagataacattaatcagttt
tgcttggcattcggaatagatgctggatggagattttttctcaataatatgaagagtgca
atatcagatactggcaagtctatactaaatgaacatctgcatcttgctgccaattgtctg
tcagctaccggggagtttgttggtttaaattcaaaaggcttgaaacaacaaagagaacat
gcatttgtctcttctcctttcatgcaagcatgcttttcaaaccctagtgcttgctttgtc
aaagctgcaaagactggagttgcggataatcttcaagggaccattgacctattggcttgg
ggaagggttcctcatattgggactggtggacagttcgatatagtctattctatgaaggat
gaagagcttgcagaaccggttgatgtgtataagctgctaggagattctattaattccaag
aagcaggatatagagtttgaaatacctaaagtttttaactctacatctgagaaacatagt
tcttcattcaagggagctcttcgtgactctgtctttgatgagtggaagaagattgaaacg
aaaacaaggtcactcttgagaggacgtctaaccttgaatgacgttcagaggcttgagcgt
aatttaaagaatattttgcgcaaatatcctattgatcaccgggtaagtgaagctgactgg
gataccttgatgatggccttgtactttcaccctcatagggttgagaagatcggatctgga
gctaaggaaataaaggtagggcatcatcccgatcatgcagacagtcgttgtttctttttg
gttagaacagatgagacaactgtagatttctcatatcggaaatgtgttgtcggtgcactc
gagatcattgcacctcgtagggcacaatcctacaagtcaaaatggttacaacatggtagt
ttgtaa

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