KEGG   Gossypium hirsutum (upland cotton): 107928928
Entry
107928928         CDS       T04793                                 
Name
(RefSeq) squalene synthase 2 isoform X1
  KO
K00801  farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi00100  Steroid biosynthesis
ghi00909  Sesquiterpenoid and triterpenoid biosynthesis
ghi01100  Metabolic pathways
ghi01110  Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09100 Metabolism
  09103 Lipid metabolism
   00100 Steroid biosynthesis
    107928928
  09109 Metabolism of terpenoids and polyketides
   00909 Sesquiterpenoid and triterpenoid biosynthesis
    107928928
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01006 Prenyltransferases [BR:ghi01006]
    107928928
Enzymes [BR:ghi01000]
 2. Transferases
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.21  squalene synthase
     107928928
Prenyltransferases [BR:ghi01006]
 Terpene biosynthesis
  Squalene/phytoene synthase
   107928928
SSDB
Motif
Pfam: SQS_PSY
Other DBs
NCBI-GeneID: 107928928
NCBI-ProteinID: XP_016715723
UniProt: A0A1U8LQK8
Position
D01:complement(207552..212393)
AA seq 427 aa
MGSLGALMKHPDDFYPLLKLKMAARNAEKQIPSEPHWGFCFSMLHKVSRSFALVIQQLDT
ELRHAVCIFYLVLRALDTVEDDTSVAADVKVPILIDFYRHIYDPDWHFSCGTKEYKVLMD
QFHHVSAAFLELEKGYQEAIEDITLRMGAGMAKFICKEVETVDDYDEYCHYVAGLVGLGL
SKLFHAYGSEDLAPESLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVKKL
EDLKDEENSVKAVQCLNDMVTNALLHVDDCLKYMSALRDPAIFRFCAIPQIMAIGTLALC
YNNIKVFRGVVKMRRVFQVDVHFISASFPGLTAKVIDRTKSMTDVYGAFYDFSCILKAKV
DKNDPNAQKTVSRLDSILKTCRDSGVLNKRKSYIIENQSNYTPFVVVLLFIIFAIFLVNL
NPNWPNN
NT seq 1284 nt   +upstreamnt  +downstreamnt
atggggagtttgggagcactgatgaaacatccagatgatttttatccattgttgaaattg
aaaatggcggcgagaaatgccgagaaacagatcccatcggagcctcactggggtttttgt
ttctctatgcttcacaaagtttctcgtagtttcgctcttgttattcagcagctcgataca
gagcttaggcatgcagtttgcatattttatttggttcttcgagctcttgatactgttgag
gatgatactagtgttgcagcagatgtcaaagttccaattcttatagatttttatcgtcac
atatatgatcccgactggcacttttcttgtggtacaaaggaatacaaagttctcatggat
cagtttcatcacgtgtctgctgcttttctggaactcgaaaaaggttatcaggaggcaatt
gaggatattacactaagaatgggagcagggatggcaaaatttatttgcaaggaggtcgaa
acagttgatgactatgatgaatattgtcactatgtagccggacttgtcggattaggtttg
tccaagctattccatgcctatggatcagaagatttggctccggaatcgctctccaattca
atggggttgtttcttcagaaaacaaatattatccgagattatctagaggatatcaatgaa
ataccgaagtcacgcatgttttggccacgccagatttggagtaaatacgtcaagaaactt
gaggacttgaaagacgaggaaaactcggtcaaggcggtgcagtgcttgaatgacatggtc
actaacgctttactacatgttgatgattgcctgaaatacatgtccgctttacgtgaccct
gcaattttccgattttgtgcaatccctcagatcatggctatcggaacactagccttgtgt
tacaacaacatcaaagtcttccgaggtgttgtgaaaatgaggcgcgtatttcaggtcgat
gttcatttcatctcggcctcatttccaggtttaactgcgaaagtcattgatcgaacaaaa
tcaatgactgatgtctatggtgctttttatgatttttcttgcattttgaaagccaaggtc
gacaaaaatgatcctaatgcacaaaaaaccgtgagccgactcgattcaatcctgaagact
tgccgagactcgggtgtgctaaacaaaaggaaatcatacataatcgagaatcagtccaat
tacactccgtttgtggttgttttgcttttcatcatattcgccatctttttggttaacctg
aacccaaactggcctaataactag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (6)   
   KEGG PATHWAY (4)   
   KEGG MODULE (2)   
Chemical substance (7)   
   KEGG COMPOUND (7)   
Chemical reaction (4)   
   KEGG ENZYME (1)   
   KEGG REACTION (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (34)   

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