KEGG   Gossypium hirsutum (upland cotton): 107931226
Entry
107931226         CDS       T04793                                 
Name
(RefSeq) cell division cycle protein 48 homolog
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    107931226
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107931226
   03009 Ribosome biogenesis [BR:ghi03009]
    107931226
   04131 Membrane trafficking [BR:ghi04131]
    107931226
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ghi04147]
    107931226
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     107931226
Ribosome biogenesis [BR:ghi03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    107931226
Membrane trafficking [BR:ghi04131]
 SNARE
  SNARE associated proteins
   Others
    107931226
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    107931226
Exosome [BR:ghi04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   107931226
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N CDC48_2 AAA_16 AAA_2 AAA_5 AAA_22 AAA_33 AAA_14 TIP49 AAA_18 AAA_28 nSTAND3 RNA_helicase Mg_chelatase AAA_17 IstB_IS21 ATPase_2 Viral_helicase1 Parvo_NS1 ABC_tran Zeta_toxin AAA_7 NACHT NB-ARC TsaE AAA_24 DUF815 Vps4_C Sigma54_activ_2 ATP-synt_ab Rad17 UFD1 KAP_NTPase Phage_Mu_Gp48
Other DBs
NCBI-GeneID: 107931226
NCBI-ProteinID: XP_016718529
UniProt: A0A1U8LZ31
Position
A04:65794531..65799185
AA seq 805 aa
MSNQAESSDSKGAKKDFSTAILERKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGD
TILIKGKKRKDTICIALADDTCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCV
VAPDTEIFCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLFGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNTKLAEDVDLERISKETHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPIAKEVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSEN
PEAMEEDVEDEVAEIKPAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFAE
TGSRTAASDPFAAAAGGADEDDLYS
NT seq 2418 nt   +upstreamnt  +downstreamnt
atgtctaaccaagctgagtcctctgactcgaagggggctaagaaggattttagtacggcg
atcttggaaagaaagaaggcagcaaatcgactcgttgttgatgaggcaatcaacgatgat
aactctgttgtttctcttcatcctgataccatggaaaagcttcagctgtttcgcggtgac
actattctcatcaagggaaagaaaaggaaagatactatctgcattgctctggcagatgac
acatgtgatgaacctaagatcaggatgaataaggttgtcaggtcaaacttgagagttagg
cttggtgatgttgtctctgtgcatcagtgtccagatgttaagtatggaaaacgtgtgcac
atcttgcctgtggatgacacaattgaaggggttactggaaatctctttgatgcttacctg
aaaccttactttctggaagcctaccgcccagtgaggaagggtgatctcttccttgtgagg
gggggaatgagaagtgtagaattcaaggttattgagactgaccctccagagtattgtgtg
gttgcaccagacactgagatattctgtgaaggagagcctgttaagagggaggatgagaat
agattagatgaggtgggttatgatgatgttggtggagtgagaaaacagatggctcagatt
cgggaactagtggagcttccattgaggcatccacagttatttaaatcaattggcgtgaag
ccacctaaaggaatcttgctttttggacctcctggatctggaaagactttgattgcccgt
gcagttgcaaatgaaactggtgctttctttttttgcatcaacggtcctgagatcatgtca
aaattggccggggagagtgaaagcaatcttagaaaagcttttgaggaagcagagaagaat
gcaccatctattatattcattgatgaaattgattcaattgctccgaagagagagaagaca
catggtgaagttgagaggagaattgtctctcagctgttgacattgatggatggtcttaaa
tcccgtgcacatgttattgttattggggccacaaatcgtcccaatagcattgatcctgct
cttagaaggtttggaagatttgatagggagattgatattggtgtccctgatgaagttggc
cgtcttgaggtgctccgtatccacaccaagaacacgaagctggctgaagatgttgattta
gaaagaatttccaaggagacacatggctatgttggtgctgatctcgcagctctctgtacg
gaggcagcgttacagtgcatcagggaaaagatggatgtgattgacttggaagatgagaca
atagatgctgagatactcaactctatggcagtctcaaatgagcacttccagactgctctt
ggaacaagcaatccatcagccctgcgtgaaactgttgttgaagtacctaacgtcagttgg
gaagatattggaggcctcgagaatgttaaaagggagcttcaagagactgttcaatatcct
gtggagcatcctgaaaaatttgagaagttcgggatgtcaccctcaaagggagtactattc
tatggccctccaggatgtgggaaaacccttttggccaaagctattgccaatgagtgtcag
gcaaacttcatcagtgtcaagggtccagaattactaacaatgtggttcggagagagtgag
gccaatgtgagggaaatttttgacaaggctcgccagtctgctccttgtgtcctgttcttt
gatgaacttgattcaattgctacccagagaggaagcagcgtgggtgatgcagggggtgct
gctgatagggttttgaaccaacttcttactgagatggatggcatgtctgcgaagaaaact
gttttcatcattggagccaccaaccgacctgatattatagatccagcacttctgcgtcca
ggtcgtcttgatcagttgatctatattcctctccctgacgaggattctcgccatcagatt
tttaaggcttgcttgaggaaatcaccaattgcaaaagaggttgacctcagagctcttgcc
aaatatactcaagggtttagtggggctgatatcacagaaatttgccaacgagcatgtaaa
tatgccataagagaaaacattgaaaaggatattgagagagaaaggagaagaagtgagaac
cctgaagctatggaggaagatgttgaggatgaagtggcagaaatcaagcctgcacatttt
gaggaatcaatgaagtttgctcgtaggagtgtgagcgatgctgacatccgcaaataccaa
gcatttgctcaaacattgcagcagtcgaggggatttggaagtgaatttaggttcgctgaa
actggttccaggactgcagcctctgatccttttgctgctgctgctggaggagctgatgaa
gatgacctttacagttaa

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