KEGG   Gossypium hirsutum (upland cotton): 107932708
Entry
107932708         CDS       T04793                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 6 isoform X1
  KO
K03131  transcription initiation factor TFIID subunit 6
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    107932708
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107932708
   03036 Chromosome and associated proteins [BR:ghi03036]
    107932708
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     107932708
   Coactivators
    SAGA/TFTC/STAGA complex
     107932708
Chromosome and associated proteins [BR:ghi03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     107932708
    STAGA complex
     107932708
    TFTC complex
     107932708
    SAGA complex
     107932708
    SLIK complex
     107932708
SSDB
Motif
Pfam: TAF6_C TAF TFIID-31kDa CBFD_NFYB_HMF Histone
Other DBs
NCBI-GeneID: 107932708
NCBI-ProteinID: XP_016720277
UniProt: A0A1U8M0G5
Position
A04:complement(1387252..1390892)
AA seq 526 aa
MSNVPKEAIEVIAQSIGITNLSPDVALALAPDVEYRVREIMQEAIKCMRHSRRTVLTTDD
VDSALNLRNVEPICGFASRDALRFKKAAGHKDLFYIDDKDVEFKEVLESPLPKAPLDTSV
TSHWLAIEGIQPAIPENASIEAPSDGKKAEYKEDGLSVDVKLPIKHVLSRELQLYFDKIV
DITMNKSVSILFKQALLSLATDSGLHPLVPYFTCFIADEVARNLNNFPLMFCLMRVARSL
LQNEHLHIEPYLHQLMPSIITCLVAKRLGNKFTENHWELRNFAAKLVASICKRFGHVYHN
LQPRVTRTLLHAFLDPTKTFPQHYGAIQGLAALGPSVVRLLILPNLEAYLQLLEPEIKRH
EAWCVYGALLRAAGLCMYDRLKMFPSLLAPPTRPVWKSNNKVATNKRKASTDTLMQQQPP
AKKIATESAIGMMPINSMQTDLQGAVSGFSTTVGGSNIGVSSMSRPLSNDNMLGREVGGR
VSKTSTVLAQAWKEDTDPGNLLASLFELFGESMLSFTPKPELSFFL
NT seq 1581 nt   +upstreamnt  +downstreamnt
atgagtaacgttccaaaagaagccattgaagtgatagcacagagcattggcattaccaat
ttgtccccagatgtcgcccttgctttggctcctgatgttgaatatcgcgttcgagaaatc
atgcaggaggcaattaaatgcatgcgccactcacggcggacggttctgacaactgatgac
gttgacagtgctcttaatctgagaaacgtggagccgatatgtggatttgcctctcgtgat
gcactacgattcaagaaagccgctgggcataaggatttgttctacattgatgacaaagat
gtggagtttaaagaagttcttgagtcacctttgccaaaagcaccacttgatacatctgtt
acatcccactggcttgcgattgaaggcattcaaccagcaattccagaaaatgcttcaatt
gaagcaccctctgatggtaaaaaggctgaatacaaagaagatgggctttccgttgatgtc
aaattacctattaagcatgtattatctagagaacttcaactttactttgacaagatcgtg
gacattaccatgaataaatcagtctcgattctctttaaacaagcattactgagtttggca
acagactcaggattacatcctttagttccttattttacatgtttcattgctgatgaggtt
gcacggaatttgaacaatttccctctcatgttttgtttgatgcgtgttgcccggagtctt
ctccagaatgaacacttgcacatagaaccttacttacaccagttgatgccatctattatt
acatgcctcgttgcaaaaaggttaggaaataaattcaccgaaaatcattgggaacttaga
aacttcgcagcaaagctagtggcatcaatttgcaaaagatttgggcatgtttatcacaat
cttcagccacgtgtgacaaggacactgctccacgcttttttggacccaacgaaaacattt
ccccagcattacggagcaattcaagggttagcagcccttggacccagtgtggttcgttta
cttatactaccaaatcttgaagcgtatttgcagcttcttgaacctgaaataaaaagacac
gaggcctggtgtgtttatggggctctgctgcgtgcagctggactgtgcatgtatgatcgg
cttaaaatgttccccagtttgctagcacccccaactcgtcccgtctggaaaagcaacaac
aaagttgcgactaataaacgaaaagcaagcacggacaccttgatgcagcagcaaccacct
gccaagaaaatagcaactgagagtgcaataggtatgatgccaataaattccatgcaaact
gatttacaaggggcagttagcggcttttctaccaccgtaggaggttccaatattggtgta
tcatcaatgtcacggccgttatcaaacgataacatgctaggaagggaggtcgggggtcga
gtttcaaagacatcaactgttctagctcaggcctggaaggaagacacagacccagggaac
ttgttagcatcattatttgaactttttggtgagagtatgttatcatttacccccaaacct
gagctttcattcttcctttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (25)   

Download RDF
DBGET integrated database retrieval system