KEGG T04793: 107933166

Gossypium hirsutum (upland cotton): 107933166

Entry

107933166         CDS       T04793

Name

(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 2

K03128

transcription initiation factor TFIID subunit 2

Organism

ghi Gossypium hirsutum (upland cotton)

Pathway

ghi03022

Basal transcription factors

Brite

KEGG Orthology (KO) [BR:ghi00001]
09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    107933166
09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:ghi01002]
    107933166
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107933166
   03036 Chromosome and associated proteins [BR:ghi03036]
    107933166
Peptidases and inhibitors [BR:ghi01002]
Metallo peptidases
  Family M1
   107933166
Transcription machinery [BR:ghi03021]
Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     107933166
   Coactivators
    SAGA/TFTC/STAGA complex
     107933166
Chromosome and associated proteins [BR:ghi03036]
Eukaryotic type
  Histone modification proteins
   HAT complexes
    TFTC complex
     107933166

SSDB

Motif

Pfam:

Peptidase_M1 HEAT_2 Peptidase_M1_N

Other DBs

NCBI-GeneID:

107933166

NCBI-ProteinID:

XP_040973988

Position

A07:complement(5130345..5146829)

AA seq 829 aa
MAKPRKPKPEDPKPAHSGAVVRHQKLCLSIDTNLRRIYGYTELEIEVPDIGIVGLHAENL
GIESVLVDGEPTDFEYYPRSQSSDIEKRWASAVSSPSSAADVAAAAYITALDTELIPNLL
INCCNKMQIEQMNTEPNGVQSSAEVNQNVKSVRVNYWVEKMETGIHFEDNVVHTDNQIRR
ARCWFPCIDDNNQRCCFDLEFTVAHNLVAVSNGSLLYQVLSKYDPPCKTYVYRLDVPVTA
QWISLAVGPFEILPDQHNGLISHMCLPPNLPKLRHTVEFFHNAFSEYEQYLDAKFPFGSY
NQVFLSPEMAISSSTVGASLCILTSQVLFDEKVIDQTIDTCIKLAFALSRQWFGVYITPE
APNDEWLLDGLAGFLTDLFIKKFLGNNEARYRRYKANCAVCKADDSGATALSSSFACKDL
YGTHSVGLLGKIRSWKSVAILQMLEKQMGPDFFKKILQAIICRAQSTTCPVRSLSTKEFR
HFANKIGNLERPFLKEFFPRWVGFYGCPVLRMGFSYNKRKNIIELAVLRECTATIDSSVS
VLNANPDSENRDGDIGWPGVMTVRVYELDGMSDHPDLPMAGDAWQLLEIACHSKLAARRY
QKPKKGSKPDGSDDNGDLPTVDMRSSVDSPLLWIRADPEMEYLAEIHFNQPVQMWINQLE
KDEDVVAQAQAITALESLPELSFSVLKALNNFLNDSKAFWRVRIEAALALASTSSEETDM
AGLQHLVKFYKSRRFDTDIGLPKPNDFSDFPEYFVLEAIPHAVATIRAADRKSPREAVEF
ILQLLKYNDNNENPYSXVFWLAALVQSVGELEFGHRFCSQVSFFVLPED

NT seq 2490 nt +upstreamnt +downstreamnt
atggccaagcctcgcaaacccaagcccgaagacccgaagccagctcactccggcgccgtt
gtccgccaccagaagctttgcctctccatcgacacgaaccttcgtcgcatttacggctac
actgagcttgaaattgaggtgcctgatatcggcatcgttggattacatgcggagaattta
gggattgagagtgtgcttgtagatggggaaccgacagattttgagtattacccgcgtagt
cagagctccgatattgagaaacggtgggcctccgctgtgtcttcaccgagttcagccgcg
gatgttgctgcagctgcttacatcacggctcttgatacagaactgatccctaatttgctt
atcaattgttgcaataagatgcaaattgagcaaatgaatacggagcctaatggagtacaa
tcttctgctgaggtcaaccagaatgtgaaatctgttcgtgttaactattgggtagagaaa
atggagacagggattcattttgaggataatgtggtccatactgataatcagatacggcgt
gctcggtgctggtttccttgtattgatgacaataatcagcggtgctgttttgatctggag
ttcacggttgctcacaatctcgtagctgtcagcaatgggagcttattatatcaggtattg
agcaaatatgaccctccctgcaagacatatgtctacaggttagatgttcctgttactgct
cagtggatatccttagcagttggaccatttgaaatcctccctgatcagcataacggtctc
atttcacacatgtgtttaccacctaatttgccaaagctgcgtcacacggtggagtttttc
cataatgcattcagtgagtatgaacagtatcttgatgcaaaatttccatttgggtcatac
aaccaagtttttctatctcctgaaatggcaatatcttcctcaactgttggagcctccttg
tgcatccttacttctcaagttttatttgatgagaaggtcattgatcagacaatagacaca
tgcatcaaacttgcttttgctctttcaagacagtggtttggggtgtatattactcctgag
gcaccaaatgatgagtggctgctggatggtctagctggttttttgacagatttgtttatc
aagaaatttttaggaaataacgaggcacggtatcgaagatacaaggcaaattgtgctgtt
tgcaaagcagatgatagtggtgcaacagctttgagttcctcttttgcttgcaaggatttg
tatggaactcattccgttggcttgcttggaaaaatacgatcatggaagtcagtggcaatt
cttcagatgttagaaaagcagatgggacctgacttcttcaaaaagattctgcaagcaata
atttgtcgtgcacaaagtacaacctgtcctgtgaggtctcttagtacgaaagagttccgg
cattttgctaataaaattggaaacctggagcgtccatttctcaaagaattttttcctcgg
tgggtaggattttatggatgtccagttctcaggatggggttttcctacaacaagcggaaa
aatatcattgagttggcagttctgcgcgaatgcacagctacaatcgattcaagtgtatca
gttctgaatgctaatcctgattctgaaaatcgtgatggtgatattgggtggcctggagtt
atgactgtgagggtttatgaacttgatggtatgtctgatcatcctgatcttccaatggct
ggagatgcatggcagctgctggaaatagcatgccactcaaagcttgctgctagacgctac
cagaagcctaaaaagggttcaaaacctgatggctctgatgataatggtgatttgcctaca
gtagatatgcgttcgagtgtagactccccattgttgtggattagggcagatccagagatg
gaatatcttgctgaaattcattttaatcaacctgtacagatgtggattaatcagttagag
aaggatgaagatgtggtagctcaggcacaagcaatcactgcactagaatctttaccagag
ctttcattttctgttctcaaggcactgaataatttcctgaatgactccaaggccttctgg
agggttcgaatcgaggctgcacttgcattagctagcacatcttccgaggaaactgacatg
gctggtttgcaacatctggtgaaattttataaaagtagaaggtttgacacagatattgga
ctaccaaaaccaaatgacttctcagattttccggagtactttgttcttgaggccattcca
catgccgtagcaacgataagagctgcagacaggaaaagccccagagaagctgttgagttt
attttgcaacttttaaagtataatgataataatgagaatccttactctnatgtattctgg
ctcgctgcattggtacagtcagttggtgaacttgaatttgggcacaggttttgttctcaa
gtgtctttctttgtgttacctgaggattaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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