KEGG   Gossypium hirsutum (upland cotton): 107936378
Entry
107936378         CDS       T04793                                 
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB5
  KO
K10845  TFIIH basal transcription factor complex TTD-A subunit
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03022  Basal transcription factors
ghi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    107936378
  09124 Replication and repair
   03420 Nucleotide excision repair
    107936378
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107936378
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107936378
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     107936378
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     107936378
SSDB
Motif
Pfam: Tfb5
Other DBs
NCBI-GeneID: 107936378
NCBI-ProteinID: XP_016724586
UniProt: A0A1U8MCL0
Position
A12:104236359..104238328
AA seq 70 aa
MVNATKGLFVSCDIPMAQFIVNLNASLPAAHKFIIHVLDSTHFFVQPDVAGMIRSAISEF
RDQNSYEKPT
NT seq 213 nt   +upstreamnt  +downstreamnt
atggtcaacgcgactaaagggctgttcgtttcttgtgacattcccatggcacagtttatc
gtgaatttgaatgcatcgctgccagctgcacataagtttataatacatgtgctggatagc
acgcactttttcgtgcaacctgatgtcgccggaatgatacgaagtgccatatccgagttc
agagaccagaattcatacgagaagccaacttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (18)   

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