KEGG   Gossypium hirsutum (upland cotton): 107942404
Entry
107942404         CDS       T04793                                 
Name
(RefSeq) E3 ubiquitin-protein ligase RDUF1-like
  KO
K11982  E3 ubiquitin-protein ligase RNF115/126 [EC:2.3.2.27]
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ghi04131]
    107942404
   04121 Ubiquitin system [BR:ghi04121]
    107942404
Enzymes [BR:ghi01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     107942404
Membrane trafficking [BR:ghi04131]
 Endosome - Lysosome transport
  Rab GTPases and associated proteins
   Rab associated proteins
    107942404
Ubiquitin system [BR:ghi04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    107942404
SSDB
Motif
Pfam: zf-RING_2 DUF1117 zinc_ribbon_9 zf-C3HC4_2 zf-RING_11 zf-rbx1 zf-C3HC4 zf-RING_UBOX zf-ANAPC11 zf-RING_5 zf-C3HC4_3 Prok-RING_4 C1_1 zf-HC5HC2H Vps39_2 Reov_VP3_MTase1 zf-RING_10 zf-HC5HC2H_2
Other DBs
NCBI-GeneID: 107942404
NCBI-ProteinID: XP_016731556
UniProt: A0A1U8MXI5
Position
A07:complement(17600108..17601652)
AA seq 322 aa
MSSTSSYWCYSCSLLFRISASDNATNEAIVCPYCDGGFIEEIESSDDHSPRFPPTYIIPS
NRRDSDRNRNPVSRRNRWIPIGHLNINPIIVLRGTTGDESTTATDGNNNNSSEFDFFYDD
GSGSGLRSIPTSMSESLMGLGFNRLLAHLSQIEITGLGQHQNHPASKTAIESMPTIQIEA
TYVRSETYCAVCKEPFELGTEAREMPCKHIYHQDCIIPWLSLRNSCPICRHEVPSDRSEL
NDDVLETVGFSIWRLPGGLFGVTRVRREREVPVVYPEMDVGFGEWGSDSGHGDVTTVSWG
EVRRRENGFRRVVRNVTSFCDA
NT seq 969 nt   +upstreamnt  +downstreamnt
atgtcttcaacgtcgtcgtattggtgttacagctgctcccttctgtttcgcatctcggct
tcagataacgcaaccaacgaagccattgtatgcccctactgtgacggaggtttcatcgag
gagattgagtcatccgatgatcatagccctcggtttccacctacctacatcatccccagc
aaccgtcgagattcggatcggaaccggaaccccgtttctcgtcgaaatcgttggattcct
attggccacttaaacatcaatccaataatcgtcctacgtggtacaaccggcgacgagagc
accaccgccaccgatggaaacaacaacaacagcagcgaatttgacttcttctatgacgac
ggttcggggtcgggtttaagatccataccgacctccatgtccgaatctctaatgggattg
ggtttcaatcggctattagcacatctttcccagatcgaaataactggattggggcaacac
cagaaccatcccgcttcaaaaacagcgatcgaatcaatgccgacgattcaaatagaggcc
acctatgtacgttcagaaacttactgtgccgtttgtaaagagcctttcgagcttgggacg
gaagctagggagatgccatgcaagcatatttatcatcaagattgtatcatcccatggctt
tccctccgaaactcgtgccctatctgccgtcacgaagtgccatcggatcgaagcgagtta
aacgatgacgttttggagacggtgggattcagtatatggaggttgcctggtgggcttttt
ggggtgacaagggttagaagagaaagggaagtgcccgtggtttacccggagatggatgtt
gggtttggggaatggggatcggattcgggtcatggagatgtgacgacagtttcctggggc
gaggttagaaggagagagaatgggtttaggagagttgtgaggaatgtgacgtcgttttgc
gatgcttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (18)   
   Pfam (18)   
All databases (36)   

Download RDF
DBGET integrated database retrieval system