KEGG   Gossypium hirsutum (upland cotton): 107953905
Entry
107953905         CDS       T04793                                 
Name
(RefSeq) transcription initiation factor IIE subunit alpha isoform X1
  KO
K03136  transcription initiation factor TFIIE subunit alpha
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    107953905
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107953905
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIE
     107953905
 Prokaryotic type
  Archaeal type
    TFE
     107953905
SSDB
Motif
Pfam: TFIIE_alpha Zn-ribbon_8 Zn_ribbon_SprT HTH_Crp_2
Other DBs
NCBI-GeneID: 107953905
NCBI-ProteinID: XP_040953381
Position
D07:complement(11095135..11098835)
AA seq 483 aa
MSIEPFNRLVKLAARAFYDNVTTKAENQPKMGRGDNKGIAVVVLDALTRRQWVREEDLAK
ELKLHSKQLRRTLRLFEEEKLITREYRKETAKGAKLYNAAVAATVDGQPSGKEGEEKVKL
HTHSYCCLDYAQIYDVVRYRLHRMKKKLKDELEDKNTVQEYVCPGCSKRYNALDALRLIS
LEDESFHCERCNGELVAESDKLAAEEVGEGDDNARRRRRENLKDMLQKMELQLKPLMEQL
NRVKDMPIPEFGTLLSWETRVGAAGHALNGAGSNDPYKNSQGYGGTPMPFLGDTKVEVAF
SGLDSKEDVKTESASTSLKVLPPWMIKQGMNLTKEQRGEVKQESKAEDSSSQPDFSDDKK
STIGNDDKKNVQEDDKKNIQDEYLKAYYAALYKKQQELEEAENKKQEPADTSLETDLSDS
TKRQVGMKVKREDNDEEDDDINWEVDPFSISGNTTNNYKVDDLNVEAEASAGDDEDDIDW
EEG
NT seq 1452 nt   +upstreamnt  +downstreamnt
atgagcatcgagccctttaacaggttggtgaagcttgcagctcgagcattttatgataat
gtgacgacaaaagcagaaaatcaacctaagatgggtcgtggtgataataaagggattgct
gttgtagtacttgatgctcttacaaggagacaatgggttagggaagaagatttggcaaag
gagttgaaactacattcaaagcaacttcggcggactctacggctctttgaggaagaaaaa
ttaatcacccgtgaatataggaaagagacggctaaaggggcaaaactatataatgctgca
gttgctgcgacggtcgatggtcaaccaagtgggaaagagggagaggagaaggttaaatta
catactcactcttactgttgtctggattatgcacagatatatgatgttgttaggtataga
ttgcaccgtatgaagaaaaaactaaaggatgaactcgaggacaaaaataccgttcaggag
tatgtatgcccgggctgttcaaaacgatacaatgctttagatgcattgcgattgatttcc
ttggaggatgaatcttttcactgcgaaagatgtaacggagaattagtggctgagagtgac
aagttagcagcagaagaagtaggagagggagatgacaatgcgagacgacggcgacgtgaa
aatttgaaggacatgcttcagaaaatggagctacaacttaaaccattaatggaacaactc
aacagagtaaaagatatgcctattccagaatttggaaccctcctatcatgggaaactcga
gtaggtgctgctggtcatgctctaaacggtgctggttctaatgatccttataaaaattct
cagggttatggtggaacaccgatgccatttcttggggatacaaaggttgaagttgctttt
tctggtcttgatagcaaggaagatgtcaaaaccgagagtgcaagcacatcattgaaagtt
ttgccaccttggatgataaagcaaggaatgaacctaacaaaggaacaacggggagaggtc
aagcaagagtcgaaggcagaagacagttcatcacaaccggatttttcagacgacaaaaag
tcaaccattggaaatgatgataagaagaatgtacaggaagatgataagaagaatatacag
gatgagtatcttaaagcatattatgctgctttatataagaaacaacaagaactagaagaa
gcggaaaacaaaaaacaagaaccggcagatacgtctttagaaactgatctttcggattct
accaagcgtcaagttggcatgaaagttaaacgtgaagacaatgatgaggaagatgatgat
attaattgggaagtagatcccttttcaatttcaggcaatacgaccaataattacaaagtc
gatgatttgaatgttgaagcggaggcatctgcaggtgatgacgaggatgatatagattgg
gaagaaggctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (7)   
   RefSeq(nuc) (3)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (22)   

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