KEGG   Gossypium hirsutum (upland cotton): 107958508
Entry
107958508         CDS       T04793                                 
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107958508
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ghi03041]
    107958508
Enzymes [BR:ghi01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     107958508
Spliceosome [BR:ghi03041]
 Complex C
  Other components
   Step II factors
    107958508
SSDB
Motif
Pfam: OB_NTP_bind HA2_C S1 HA2_N Helicase_C DEAD AAA_22 AAA_19 AAA_30 nSTAND3 ABC_tran TsaE AAA_16 Sigma54_activ_2 T2SSE PhoH AAA_33 Flavi_DEAD
Other DBs
NCBI-GeneID: 107958508
NCBI-ProteinID: XP_040969252
Position
A05:complement(10755534..10760194)
AA seq 1189 aa
MASSPAQDDALKKLEYLSLVSKVSSELESHVGFSDKVLAEFITDMGRHSETVDEFDVKLK
ENGAELPDYFVRTLLTIIHAILPPKPKAEKESKKAIAGDGKKSKFKALAIADDKDRAKEL
EKEIEMETRDLKKVEGRDRDRGRDRYRRDSDRVRDRDRDKDRSRHRDRYTEDADDDRMDY
GSRGRNRDRTRHNRDGDEDNRDYRNRGRIRDRGNVEGDEGGDKRSNGRYKDNEPELYKVY
KGRVSRVMDSGCFVQLNELRGKEGLVHVSQMASRRIANAKDVVKRDQDVYVKVISVSGQK
LSLSMRDVDQNTGKDLLPLKKTSDDDALRINPSGGKEWPVMRTGLSGIRIVEDEDTAPSR
RPLKRMSSPERWEAKQLIASGVLRLDEYPMYDEDGDGMLYEEEGAEEELEIEMNEDEPAF
LQGQTRYSVDLSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRP
WEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKALTFGQRSKLSIQEQRQSLPIYK
LKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKR
VAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDEDLSQYSVIMLDEAHE
RTIHTDVLFGLLKQLLRRRADLRLIVTSATLDAEKFSGYFFDCSIFSIPGRTFPVEILYT
KQPESDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELII
LPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVVDPGFAKQNVYNPKQ
GLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGMTT
LTMKAMGINDLLSFDFMDPPAPQALLSAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPL
SKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVY
EAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFMTIRKAITA
GFFFHAARKDPQEGYRTVVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVID
PKWLVELAPRFFKQADPSKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq 3570 nt   +upstreamnt  +downstreamnt
atggcttcatctcctgcccaagacgatgcgctgaagaaacttgaatatctctccctcgtc
tccaaggtcagctccgaactcgagagccatgtagggttttccgataaggttttggccgaa
ttcatcaccgacatgggtcgccactccgagaccgttgacgaattcgatgtcaagctgaaa
gaaaacggtgccgagttacctgattacttcgtccgtacacttcttactatcatccacgct
attctgcctccaaaacccaaggctgagaaggaatccaagaaggcaatcgccggtgacggt
aagaaatctaaatttaaagctttagcgattgcagatgataaagatagagcaaaagaactt
gagaaggaaattgaaatggagacacgagacctaaaaaaagtagagggtagggatagggac
agaggcagagacagatataggagggatagcgatagggtcagagacagagatagagataaa
gataggagtaggcatagagatagatatacggaggatgctgatgatgataggatggattat
ggcagtcggggaagaaatagggatcgaacccgacataatagagatggtgatgaggataat
agagattataggaataggggcaggatcagggaccggggtaatgtggaaggtgatgaaggt
ggggataagaggagtaatggaaggtacaaggataatgagcctgagttgtataaggtatac
aaggggagagtttcaagagtgatggattcaggttgttttgtgcagttgaatgagttaagg
ggaaaggagggtttggttcatgtttcccagatggctagtaggaggattgccaatgcaaaa
gatgttgtgaaacgggatcaggacgtttatgtgaaggtaatttcagtttcaggtcagaag
ttgagtttgtctatgagggatgttgatcagaatactggtaaggacttgcttccgttgaag
aaaacttcagatgatgatgctcttaggattaatccttcaggggggaaagagtggcccgtg
atgagaactggcctttcagggattaggattgttgaggatgaggatactgccccttcacgt
aggccattgaagagaatgagttcgccagagaggtgggaagccaaacaattgattgcttct
ggtgttctgagactagatgagtatcccatgtatgatgaagatggagatggaatgctttat
gaagaggaaggtgctgaggaagaacttgagatcgaaatgaatgaggatgaacctgccttt
ttgcaagggcagactaggtactctgtggatctctcaccagtaaaaatatttaagaatcca
gaagggtccttgagtcgcgctgctgctctccagtctgcacttattaaggaacggcgagaa
gttcgggagcagcagcagaggacaatgcttgattcaattcccaaggatcttaatcgtcct
tgggaagacccaatgccagagacaggtgagaggcatcttgcgcaggagcttagaggtgtt
ggattgtcagcatatgatatgcctgaatggaagaaggatgcttatggtaaagctttgact
tttgggcagaggtctaaactttccatccaagagcagaggcagagcttgcccatttataaa
ttgaaaaaagagcttgttcaggctgtgcatgataatcaggtactcgtggtcattggtgag
actggttcaggtaagactacccaggtaacccagtatcttgctgaggctgggtacactaca
aagggtaagattggatgcactcaacctcgaagggtggctgcaatgtctgtggcgaagagg
gtagctgaggaatttggttgtcggctaggggaggaagttggctatgctattcgttttgaa
gattgcactggaccggatactgtcataaaatacatgactgatggtatgcttcttagggag
attttgattgacgaggatctctctcagtactctgtcattatgcttgatgaagctcatgag
cgaacgattcacactgatgtcctttttgggttactgaagcaacttctgagacggagagcc
gatcttcgtctgattgttacgtctgctacactggatgcagagaagttttcagggtatttc
tttgactgcagtattttcagcattcccggtagaacatttcctgtagagatactctataca
aaacagcctgaaagtgactacctagatgctgctcttataacagtcctacagatacacttg
actgaacctgaaggtgacattcttctcttcttgactggtcaggaggaaattgattttgca
tgccagtctctttatgagaggatgaaaggactaggtaaaaatgttcctgaattgattatt
ttaccggtttatagtgcccttcctagtgagatgcagtctaggatttttgatcctgcccct
cctgggaaaaggaaggtggtagtggcaaccaatattgccgaggcttctttaactatagat
ggaatattctatgtggttgatcctggttttgcaaaacaaaatgtctacaatccgaagcaa
gggcttgattccctggtcataacaccaatttcacaagcatcggccaaacaacgtgctggg
cgggctgggcgtactggacctggaaaatgctaccgcttgtatactgagagtgcatatcga
aatgagatgtcccctacatcgattccagagatccaaaggattaaccttggcatgacaaca
ctaacaatgaaagcaatgggcataaatgatctcctttcttttgattttatggatccacct
gcaccacaagctctcctttctgccatggagcaattatacagtttaggagctttagacgag
gaggggcttttgactaaattgggtagaaaaatggcagaatttcctcttgatccaccacta
tcgaagatgttactggctagtgtggacctcgggtgtagtgatgagatattgacaattatt
gcaatgatccaaactggtaacatcttctacaggccaagggaaaagcaagctcaagctgat
cagaagagggccaagtttttccagcctgagggagaccatttgactctacttgctgtatat
gaggcttggaaagctaagaacttttctgggccttggtgttttgaaaattttgttcagtct
cgatctttacggagggcacaggatgttagaaaacagcttctaagcatcatggataagtac
aaactggacgtagtgagtgcaggaaagaactttatgacgatcaggaaagctatcacagca
gggttcttcttccatgctgcaaggaaggacccacaggaaggatatagaacagtggtggag
aaccagcctgtttatattcacccaagtagcgcccttttccagagacaaccggactgggtg
atctaccatgagctggtaatgactacaaaggagtacatgcgagaggtgacagtgatagat
cccaaatggctggttgaacttgcgcctagattcttcaaacaggcagatcccagcaagatg
agcaagcgcaagcgtcaagaacgtattgagcctctttatgatagatatcatgaacctaat
tcttggcgtctcagtaaacgacgagcttga

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