KEGG   Grimontia hollisae: AL542_04345
Entry
AL542_04345       CDS       T04260                                 
Symbol
rnd
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
gho  Grimontia hollisae
Brite
KEGG Orthology (KO) [BR:gho00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:gho03016]
    AL542_04345 (rnd)
Enzymes [BR:gho01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     AL542_04345 (rnd)
Transfer RNA biogenesis [BR:gho03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    AL542_04345 (rnd)
SSDB
Motif
Pfam: DNA_pol_A_exo1 RNAseD_HRDC_C HRDC EnY2 Glyco_transf_88
Other DBs
NCBI-ProteinID: AMG32097
Position
1:complement(182352..183476)
AA seq 374 aa
MNFEIITEPSQLERVCQQARQVPAVMLDTEFVRTRTLYPRLGLIQLYDGETLSLIDPIEL
DDLSPLWGLLTDESVVKVLHACSEDLEVFYHYAGAMPTPMVDTQIMAAFLGHGLSTGFAS
LVEEYLVVTLDKGEARTDWCARPLSEKQLEYAAADVYYLLPLYNELSKRVSAAGWDEAVK
QECALMASKRGKTPEPEKAYLDIKNAWQLRPKQLAVLQKLASWRLREAQRRDLALNFVVR
ELHLWKMARFNIRSLDKMAEEGFDRFEIERHGSRLIRMAQEADKTPASLYPEEIVRLVDM
PGYKQMVKNIKEQTNAVAEKLGVVPEFVGSKKQIHQVLKWAWMNDRNPEKMPDMLTGWRK
TYLADKVLAVLDGQ
NT seq 1125 nt   +upstreamnt  +downstreamnt
gtgaatttcgaaattataactgaaccgtcccaacttgaacgtgtttgccaacaggcccgt
caggtaccggctgtgatgctggataccgaatttgtgcgtacccggactttgtatccacga
ctgggtcttatccaattgtatgatggtgaaacactgtctttgattgacccaattgaactt
gacgatctttcaccgctatgggggttgctgacggatgaatcggtagtgaaagtgctacat
gcctgtagtgaagacctggaagttttttaccattacgcaggtgcgatgccaacgccgatg
gtagatacccagattatggcggcttttttggggcatggcctgtcgacgggttttgcctcc
ctggtggaagaataccttgtcgttacgttggataaaggtgaagcgagaacggattggtgt
gcccgtcccctgagcgagaaacagctcgagtatgccgcggcagatgtctattacctgctc
ccactgtataacgagctctccaagcgggtatctgctgcaggctgggatgaagccgtgaag
caagagtgcgccctgatggccagcaagcgtggcaaaaccccggaaccggaaaaagcctac
cttgatattaaaaatgcgtggcagcttcgccccaagcaactggcggtgctccaaaagctg
gcaagctggcgcctaagggaagcccagcgccgggatttagcactgaattttgtggtcagg
gaactccacctttggaagatggcacggtttaacatccgttcactcgacaaaatggcggaa
gagggctttgatcgctttgaaattgagcgccatggtagccgtttgatccggatggcacag
gaagcggataaaacacccgcttccctttacccagaagaaatcgtgcgtttggtggatatg
ccaggctacaagcagatggtgaaaaacatcaaagagcaaaccaatgccgtcgcggaaaaa
ctgggtgtggtgcctgagtttgtcggttcgaaaaaacaaattcatcaggtattgaaatgg
gcatggatgaatgatcgtaacccagagaaaatgcctgatatgttgacaggatggcgaaaa
acttacttggcggacaaggtgttagctgtgttagatggacaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (21)   

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