KEGG   Gekko japonicus (Schlegel's Japanese gecko): 107119902
Entry
107119902         CDS       T04299                                 
Symbol
DDX39B
Name
(RefSeq) DExD-box helicase 39B
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
gja  Gekko japonicus (Schlegel's Japanese gecko)
Pathway
gja03013  Nucleocytoplasmic transport
gja03015  mRNA surveillance pathway
gja03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107119902 (DDX39B)
  09122 Translation
   03013 Nucleocytoplasmic transport
    107119902 (DDX39B)
   03015 mRNA surveillance pathway
    107119902 (DDX39B)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gja03019]
    107119902 (DDX39B)
   03041 Spliceosome [BR:gja03041]
    107119902 (DDX39B)
Enzymes [BR:gja01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     107119902 (DDX39B)
Messenger RNA biogenesis [BR:gja03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     107119902 (DDX39B)
Spliceosome [BR:gja03041]
 Complex C
  Other components
   EJC/TREX
    107119902 (DDX39B)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    107119902 (DDX39B)
SSDB
Motif
Pfam: DEAD Helicase_C CMS1
Other DBs
NCBI-GeneID: 107119902
NCBI-ProteinID: XP_015278011
Position
Un
AA seq 422 aa
MTENDVDNELLDYEDDEVENQAAGDGVDVPSKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQLLPLLVQ
LNGPVRLPHSSLFACPAQVSVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLN
LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTLHEKQVMMFSATLSKEIRPVCRKFMQDP
MEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQL
LVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPE
DSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFEVNISELPDEIDISSYIEQ
TR
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgaccgagaatgacgttgacaacgagctcttggattacgaggacgatgaggttgaaaat
caggcagcgggagacggggtggacgtcccgtccaagaaggacgtcaagggctcctatgtc
tccatccacagttctgggtttcgcgattttttgctgaagccagagctgctgcgtgccatt
gttgactgtggctttgagcacccctcagaagtacaacacgagtgcatcccgcaggccatc
ctgggcatggacgtcctctgccaggccaagtcgggcatgggcaagaccgccgtctttgtt
ctcgctacactacagcagctggagccggtcacgggacagctgcttccccttcttgttcag
ctgaatggtcctgttcggctgcctcattcttccctttttgcttgccccgcccaggtgtct
gtgttctttggaggcctgtccatcaagaaggacgaggaggtgctgaagaagaactgcccc
cacattgtggtggggaccccgggccgcatcctggccttggcccgcaacaagagcctcaac
ctcaagcacatcaagcatttcatcctggacgaatgcgacaagatgctcgaacagctcgat
atgcgccgggatgtccaggagatcttccgcatgaccctgcacgaaaagcaggtcatgatg
ttcagtgccactctcagcaaggaaatccgccccgtgtgccgcaaattcatgcaagacccc
atggagatcttcgtggacgacgagaccaagctgacgctgcacgggctgcagcagtactat
gtcaaattgaaagacaacgagaagaaccgcaagctctttgacctgctcgatgtgctggaa
ttcaaccaggtggtgatctttgtgaagtccgtgcagcgctgcatagcattggctcagctt
ctggtggagcagaacttcccggccattgccatacacagggggatgccccaggaggagagg
ttgtcacgttaccaacagttcaaggatttccagcgccgtatcttggtggccaccaatctc
tttggccgtggcatggacattgagcgagtcaacattgccttcaactacgacatgccggag
gattcggatacctacctgcaccgggtggctcgtgccgggcgcttcggcacaaagggcctg
gccatcacttttgtgtcggatgagaacgatgccaagatcctgaacgaagtgcaggaccgc
tttgaggtgaacatcagtgagctgcccgatgagatcgacatctcttcttacattgaacag
acccgataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (28)   

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