KEGG   Geobacillus kaustophilus: GK1053
Entry
GK1053            CDS       T00217                                 
Name
(GenBank) hypothetical conserved protein
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
gka  Geobacillus kaustophilus
Pathway
gka03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gka00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GK1053
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gka03019]
    GK1053
Messenger RNA biogenesis [BR:gka03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     GK1053
SSDB
Motif
Pfam: RNase_J_C Lactamase_B RMMBL Lactamase_B_2 DUF4453
Other DBs
NCBI-ProteinID: BAD75338
UniProt: Q5L142
Position
complement(1078861..1080528)
AA seq 555 aa
MKLLTDQQVGVFALGGLGEIGKNTYGVQFQDEIIVIDAGIKFPEDELLGIDYVIPDYSYL
VKHADKVKGLFITHGHEDHIGGIPYLLRQVNIPIYGGKLALGLIRNKLEEHGLLRQAKLI
EIREDDVIRFQKTAVTFFRTTHSIPDSYGIVVKTPVGQIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSEIPHFTMSERRVGESIHDIFRKVEGRIIFATFASNIHRLQQ
VTEAAVANNRKIAVFGRSMEAAIEIGQDLGYIKCPKGTFVDANEINRLPANRVTILCTGS
QGEPMAALSRIANGTHRQIQIIPGDTVVFSSSPIPGNTVSVNRTINMLYRAGAEVIHGPL
NDIHTSGHGGQEEQKLMIRLMKPKYFMPIHGEYRMQKMHAKLAIDCGVPEENCFIMDNGE
VLGISDKEARIVGKIPSGSVYIDGSGVGDIGNIVLRDRRILSEEGLVIVVVSINMKEFKI
AAGPDIISRGFVYMRESGDLISEAQVLISKHLEKVLERKTNQWSEIKNEITETLAPFLYE
RTKRRPMILPIIMEI
NT seq 1668 nt   +upstreamnt  +downstreamnt
atgaagctgttgacagatcagcaagttggcgtttttgccctcggcggactgggtgaaatt
ggaaaaaatacatacggcgtacaattccaagacgaaatcattgtcattgacgcaggcatt
aagtttccggaagatgagctgctcgggatcgactatgtcattccagactactcctattta
gtgaagcacgcggacaaagtgaaaggactgttcatcacccacgggcacgaagaccatatc
ggcggcattccgtatttgctccggcaggtgaacatcccgatttacggcggcaaattagcg
cttgggctgattcgcaataagcttgaggaacatggattgttgcgccaagcgaaactcatt
gagattcgcgaagacgatgtcatccgctttcaaaaaacggccgtcacctttttccggacg
acacacagcattccggacagctacggtattgttgtgaaaacgccagtcgggcaaatcgtt
cacactggggattttaaattcgactttacgccggtcggcgagccggccaatttgacaaaa
atggccgaaattgggaaagaaggagttctttgcctgctgtcggacagcacgaacagcgag
atcccgcattttacgatgtcggagcggcgcgtcggtgaaagcattcacgacattttccgc
aaggtggaaggacgcatcattttcgccacatttgcatcaaacatccaccgtctccaacag
gtgacggaagcagccgtcgccaacaaccgaaaaatcgctgtcttcggtcgaagcatggaa
gcggcgattgagatcggacaagacctcggctatatcaaatgtccgaaaggcacgttcgtc
gacgcgaacgaaatcaaccgcctgccggccaaccgggtgacgattttatgcaccggtagc
caaggggagccgatggccgccttgtcgcgcatcgccaacggcacgcaccggcaaattcaa
atcatcccgggcgacacggtcgtcttttcctcatcgccgattccgggcaacacggtgagc
gtcaaccggacaatcaacatgctgtaccgcgccggcgcagaagtcatccatggcccgctc
aacgacatccatacgtccggccacggtgggcaggaagaacaaaaattgatgatccggctg
atgaagccgaaatatttcatgccgatccacggcgaataccgcatgcaaaaaatgcacgcc
aagctcgccatcgactgcggcgtgccggaggaaaactgctttattatggacaacggcgaa
gtgcttggcatcagcgacaaagaagcgcgcatcgtcggcaagatcccgtccggctccgtc
tacatcgacggcagcggtgtcggcgacatcggcaacatcgtcttgcgcgaccgccgcatt
ttgtctgaggaagggctcgtgattgtcgtcgtcagcatcaacatgaaagagttcaaaatc
gccgccggcccggacattatttctcgcggcttcgtctatatgcgtgagtcaggtgactta
atcagcgaagcgcaagtgttgatctccaagcatctcgaaaaagtgctggaacggaaaacg
aaccaatggtcggagatcaaaaacgaaattacggaaacgctcgctccgttcttgtacgag
cggacgaaacggcggccaatgattttgccgatcatcatggaaatctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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