KEGG   Glycine max (soybean): 100779296
Entry
100779296         CDS       T01710                                 
Symbol
HDA1
Name
(RefSeq) histone deacetylase 19 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
gmx  Glycine max (soybean)
Pathway
gmx03082  ATP-dependent chromatin remodeling
gmx03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:gmx00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    100779296 (HDA1)
   03083 Polycomb repressive complex
    100779296 (HDA1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:gmx03036]
    100779296 (HDA1)
Enzymes [BR:gmx01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     100779296 (HDA1)
Chromosome and associated proteins [BR:gmx03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     100779296 (HDA1)
   HDAC complexes
    Sin3A-HDAC complex
     100779296 (HDA1)
    BRAF-HDAC complex
     100779296 (HDA1)
    REST complex
     100779296 (HDA1)
    SHIP complex
     100779296 (HDA1)
    MiDAC complex
     100779296 (HDA1)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     100779296 (HDA1)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    100779296 (HDA1)
  Chromatin remodeling factors
   NuRD complex
    100779296 (HDA1)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 100779296
NCBI-ProteinID: XP_003517607
UniProt: I1JB12
Position
1:complement(57839954..57848008)
AA seq 497 aa
MESGGNSLPSGSDGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQ
VLKPMAAKDRDLCKFHADDYVAFLRGITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQT
YAGGSVGGALKLNHGVCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKIHERVLY
VDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYAKGKYYSLNVPLDDGI
DDESYQSLFKPIMGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFN
VPLLLLGGGGYTIRNVARCWCFETSVALGIELDDKMPQHEYYEYFGPDYTLHVAPSNMEN
KNSRQLLDEIRAKLLDNLSRLQHAPSVPFQERPPDAELLERDEDQDDRDERWDPDSDREV
GDDSNPVRRRVKSECVDAEDKDTESYHKHLDCGRDYLTPFKEISCSKVSGVDSMAVDEPC
IKEEQDNLKELSDHRPR
NT seq 1494 nt   +upstreamnt  +downstreamnt
atggaaagtggagggaactcccttccatcagggtcagatggtgtgaagagaaaggtttca
tatttctatgatccagaggttggaaactattattatgggcagggacacccaatgaaacca
cacaggattcgaatgacacatgctcttttagcccactatggattgcttcaacacatgcag
gttctgaagcctatggctgctaaagatagggacctttgcaagttccatgctgatgattat
gtggcctttctgagaggcatcacccctgaaacgcagcaagatcaattgagacagctgaag
aggtttaatgttggcgaagactgccctgtatttgatggtctttactctttctgccagaca
tatgcaggaggttctgttggtggtgctctaaagttgaaccatggagtatgtgatattgca
ataaattgggctggtggtctacatcatgcaaagaagtgtgaggcttctgggttttgctat
gttaatgacattgtgctggctattttggaacttctcaaaatacatgagcgtgttctgtat
gtggacattgatatccaccatggtgatggtgtagaggaggccttttacaccaccgatagg
gtcatgactgtttcgtttcataagtttggggattactttcctggaacaggtgatattcgt
gatattggatatgctaaagggaaatattattcactaaatgttcccttggatgatggaatt
gatgatgagagctatcagtccttgtttaagccaataatgggaaaggttatggagattttt
aggcccggtgctgttgtattacaatgtggtgctgactctttatctggggacaggttaggt
tgtttcaatctttccataaaaggtcatgcagagtgtgtcagatatatgagatcttttaat
gttccccttctattgctcgggggaggtggctatacaataagaaatgtggcacgttgttgg
tgtttcgagactagcgttgctcttgggattgaactagatgataagatgcctcaacatgaa
tattatgaatattttggtcctgactatactcttcatgttgctccaagtaacatggaaaac
aagaactcccgacaattattggatgaaataagagcaaaacttcttgataatttatctagg
cttcaacatgcaccaagtgtcccattccaggaacggccacctgatgcagagcttctagag
agagatgaagatcaagatgatagagatgaaagatgggatcccgattctgacagggaggtt
ggcgatgacagcaatcctgttcgcagaagggtgaaaagtgaatgcgttgatgctgaggat
aaagatacagaaagttatcataaacatctagattgtggaagagattatcttacgcctttc
aaggagatttcatgctccaaggtgtcgggggtggactcaatggcagtggatgaaccatgc
atcaaagaggagcaggataatttaaaagagctttctgatcacaggccaagatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system