KEGG   Geodermatophilus obscurus: Gobs_2820
Entry
Gobs_2820         CDS       T01163                                 
Name
(GenBank) helicase, RecD/TraA family
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
gob  Geodermatophilus obscurus
Pathway
gob03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:gob00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Gobs_2820
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gob03400]
    Gobs_2820
Enzymes [BR:gob01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     Gobs_2820
DNA repair and recombination proteins [BR:gob03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Gobs_2820
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_4 UvrD_C_2 SH3_13 Viral_helicase1 HHH_5 AAA_11 AAA_22 Helicase_RecD AAA_16 nSTAND3 PhoH P-loop_TraG DAP3 NACHT DUF87 AAA UvrD_C AAA_10
Other DBs
NCBI-ProteinID: ADB75450
UniProt: D2S7J1
Position
complement(2934981..2937245)
AA seq 754 aa
MGEARAGTVLEATLERITYANSQTGYTVARVDTGRGGDLVTVVGSLLGAQPGETLRLRGR
WGAHPQYGRQFLVEDHTTVLPATVQGIRRYLGSGLVKGIGPRLAERIVDHFGTDALRVIE
EEPGRLAEVPNLGPKRTRLITAAWEEQRAIKEVMVFLQGVGVSTSLAVRIYRQYGDASIG
VVRNEPYRLAAEVWGIGFRTADTIAAAVGIPHDSPHRVEAGVQFVLSEATGQGHCFLPET
ELVAQAVEVLQVPAGLVGHCLALLVADQGVIREELPGRGGEPATAVYYLVPFHRAEISLA
AGLRRLVDADVDRMPAFASVDWTAALSWLGRRTGVELAAGQQAAVRLALTERVAVLTGGP
GCGKSFTVRSIVTLAAAKGARIVLAAPTGRAAKRLTELTGVEAVTVHRLLELRPGGDAAF
DRDRPLEADLVVVDESSMLDLLLANKLVRAVPPGAHLLLVGDVDQLPSVGAGEVLRDLLA
EGTPIPHVRLTEVFRQASRSGVVTNAHRVNAGSFPQVRGLDDFFLFSTDDAEEAARLTVD
VVVRRIPARFGLDPRRDVQVLTPVHRGPAGAAVLNELLQEALTPARPDRAEKRFGGRVFR
VGDKVSQIRNDYDKGANGVFNGTQGVVTAIDPVEQTLTVVTDEGEQIPYDFGELDELVHA
YAVTVHRSQGSEYPCVVIPVTTSAWMMLQRNLLYTAVTRAKQLVVLVGSTRALGQAVRVT
GSGRRHTALAHRLRGGPHRSAAAPTPLAVGAGRG
NT seq 2265 nt   +upstreamnt  +downstreamnt
gtgggggaggcgcgggccgggacggtcctggaggcgacgctggagcggatcacgtacgcc
aactcccagaccggctacacggtggcccgggtggacaccgggcggggcggcgacctggtc
accgtcgtggggtcgctgctgggtgcgcagcccggggagacgctgcggctgcgcggacgg
tggggagcgcacccgcagtacggccggcagttcctcgtcgaggaccacaccaccgtgctg
ccggccacggtgcagggcatccggcgctacctgggctcggggctggtcaaggggatcggg
ccccggctggccgagcggatcgtggaccacttcggcaccgacgcgctgcgggtgatcgag
gaggagccggggcggctggccgaggtgccgaacctgggccccaagcggacgcggctgatc
accgcggcctgggaggagcagcgggccatcaaggaggtgatggtcttcctgcagggggtg
ggcgtctccacctcgctggccgtgcggatctaccgccagtacggcgacgcctcgattggc
gtggtccgcaacgagccctaccggctggccgccgaggtgtggggcatcgggttccggacc
gcggacacgatcgccgccgcggtggggatcccgcacgacagtccgcaccgggtcgaggcg
ggggtgcagttcgtgctctccgaggcgacggggcagggtcactgcttcctcccggagacc
gaactggtcgcccaggcggtcgaggtgctgcaggtcccggcgggcctggtgggtcactgc
ctggccctgctcgtcgccgaccagggcgtgatccgcgaggagctgcccggtcggggcggg
gagccggcgacggcggtgtactacctcgtccccttccaccgggcggagatatccctggcc
gccgggttgcggaggctggtggacgccgacgtcgaccggatgccggcgttcgcgagcgtg
gactggaccgcggcactgagctggctgggcaggcgcaccggcgtcgagctcgccgccgga
cagcaggcggcggtgcgcctggcactgaccgagagggtcgccgtcctcaccggcggtccc
ggctgcggcaagagcttcacggtgcgctccatcgtcacgctggccgcggccaagggggcg
aggatcgtgctggccgcaccgaccggccgggcggcgaagcggctgaccgagctgaccggg
gtcgaggcggtgaccgtgcaccggctgctcgagctgcggccgggcggggacgccgccttc
gaccgggaccggccgctggaggccgacctggtcgtcgtcgacgagtcctcgatgctggac
ctgctgctggcgaacaagctggtgcgggccgtcccgccgggcgcgcacctgctgctcgtg
ggcgacgtcgaccagctgccctcggtgggcgccggcgaggtcctgcgcgacctgctcgcc
gagggcaccccgatcccgcacgtgcggctgaccgaggtcttccggcaggccagccggtcg
ggggtggtcaccaacgcgcaccgcgtcaacgccggcagctttccgcaggtccgcggcctc
gacgacttcttcctgttcagcaccgacgacgccgaggaggccgcccggctcaccgtcgac
gtggtggtgcgccgcatcccggcccgcttcggcctcgacccccgccgggacgtgcaggtg
ctgaccccggtgcaccgcgggccggccggcgccgccgtgctgaacgagctgctgcaggag
gcgctcaccccggcccgccccgaccgggcggagaagcgcttcggtgggcgggtgttccgc
gtcggggacaaggtcagccagatccgcaacgactacgacaagggcgccaacggggtcttc
aacggcacccagggcgtcgtcaccgcgatcgacccggtcgagcagaccctcaccgtcgtc
accgacgagggggagcagatcccctacgacttcggtgagctcgacgagctggtccacgcc
tacgccgtcaccgtccaccgctcccagggcagcgagtacccctgcgtcgtcatcccggtg
accaccagcgcctggatgatgctgcagcgcaacctgctctacaccgccgtcacccgtgcc
aagcagctcgtggtgctcgtcggctccacccgggccctcggccaggcggtccgcgtcacc
ggctccggacgccggcacaccgccctcgcccaccgcctccggggcggaccgcaccgcagc
gcggctgcaccgacaccgctcgccgtcggggccggacggggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (20)   
   Pfam (20)   
All databases (41)   

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