KEGG   Gordonia sp. YC-JH1: CXX93_11210
Entry
CXX93_11210       CDS       T05256                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
goc  Gordonia sp. YC-JH1
Pathway
goc03030  DNA replication
goc03410  Base excision repair
goc03420  Nucleotide excision repair
goc03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:goc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CXX93_11210
   03410 Base excision repair
    CXX93_11210
   03420 Nucleotide excision repair
    CXX93_11210
   03440 Homologous recombination
    CXX93_11210
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:goc03032]
    CXX93_11210
   03400 DNA repair and recombination proteins [BR:goc03400]
    CXX93_11210
Enzymes [BR:goc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     CXX93_11210
DNA replication proteins [BR:goc03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CXX93_11210
DNA repair and recombination proteins [BR:goc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     CXX93_11210
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CXX93_11210
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc DNA_pol_A_exo1 HHH_5 HHH_2 DNA_pol_lambd_f RNA_binding CbiA
Other DBs
NCBI-ProteinID: AUH68826
Position
2400979..2403672
AA seq 897 aa
MLLDGHSLAYRAFFALPAENFKTNTGQSTNAVYGFTSMLINLLRDEEPSHIAAAFDVSRQ
TFRSEMFPEYKAQRSSSPDEFRGQVDLTKDVLDAMGIPVMAIEGYEADDIIATLATAADR
QGYRVLVVTGDRDSLQLVNENITVLYPKRGVSELTRFTPEEVEKKYGLTPSQYPDFAALR
GDPSDNLPGIPGVGEKTAAKWIREYGSFEELVNRADEVRGKVGDSLRANLAGVIMNRRLT
ELVRDMELPAGPDDLALHGWDRDRIHRLFDDLEFKVLRDRLFSTLTSVEPEAESGFDLRG
KRLGSGEVAGWLVEHTASGRSGLAVTGRRAVVGSDVESLAIAGSDGEAAFIDPTSLSVDD
DAALADWLADETRPKAVHEVKWALHALRGRGWTLAGVTSDTALAAYLVRPGQRTFNLDDL
VLRYLRRELKADDAQTDDGQLSLLDDDADAQRAADQLMLSAQAVAELADTLDTELERIEG
SALLREMELPLAFVLAELECAGIAVDVEHLDALERGFAQRVRDAAEAAYEVIGEQVNLGS
PKQLQAILFDKLDMPKTKKTKTGYTTDADALTSLYEKTEHPFLKHLLEHRDATRLRVTVE
GLQKTVADDQRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDAGRQIRHAFVVAPGPVPIG
AAPVEFESLMTADYSQIEMRIMAHLSEDEGLIEAFNTGEDLHNFVGSRAFGVPVDQVDPQ
MRSRVKAMSYGLAYGLSAYGLAAQLGISREEAKQQMEQYFDRFGGVRDYLHRVVEEARRN
EYTATLFGRRRYLPDLNSDNFQRRQAAERMALNAPIQGTAADIIKVAMINVQNRLRAEKL
SSRMLLQVHDELVIEVARGERETVEAVVRAEMGGAIELSVPLEVSVGYGRSWDDAAH
NT seq 2694 nt   +upstreamnt  +downstreamnt
atgcttctggacggtcactcgctggcctaccgggcgttcttcgcgttgcccgccgagaac
ttcaagacgaacaccggccagagcaccaacgcggtctacggcttcacgtcgatgctgatc
aatctgctgcgcgacgaggagccgagccacatcgccgccgcgttcgacgtctcccggcag
accttccggtcggagatgttccccgagtacaaggcgcagcggagttcgtcgcccgacgaa
ttccggggccaggtcgacctcaccaaggacgtcctcgacgcgatgggcatcccggtgatg
gcgatcgaggggtacgaggccgacgacatcatcgccacgctcgcgacggccgccgaccgc
caggggtaccgggtcctcgtcgtcaccggcgaccgcgactcactgcagctggtcaacgag
aacatcaccgtgctgtatccgaagcgcggggtgtcggagctcacccgtttcacccccgaa
gaggtggagaagaagtacggcctcacgccgtcgcagtatccggacttcgccgcgctccga
ggcgaccccagcgacaacctcccgggcatcccgggggtcggggagaagacggcggccaaa
tggatccgcgaatacggctcgttcgaggaactggtgaaccgggccgatgaggtgcggggc
aaggtgggtgattcactgcgcgccaatctggccggcgtcatcatgaaccgcaggctgacc
gaactggtccgcgacatggagttgcccgccggccccgacgacctggccctgcacggttgg
gacagggaccggatccaccggctcttcgacgatctcgagttcaaggtcttgcgcgaccgg
ctgttctccaccctgacctcggtggagcccgaggcggagtcgggcttcgacctgcgcggg
aagcgactgggctcgggtgaggtggccgggtggctggtcgagcacaccgcgtcggggcgc
agcggactcgcggtgaccggtcggcgcgcggtggtcggcagcgacgtcgagtcgctcgct
atcgccgggtccgacggagaggccgcgttcatcgatcccacctcgctgagtgtggacgac
gatgcggcgctggcggattggctggccgacgagacccggcccaaggccgtgcacgaggtg
aagtgggccctgcacgcgctccgcggacgcgggtggacgctggccggagtcacctccgac
accgctctcgccgcgtatctggtgcggccgggacagcggaccttcaacctcgacgacctc
gtgctccggtacctgcgacgggagctcaaggcggacgacgcccagaccgacgacggtcag
ctctcgctgctcgacgacgacgccgacgcgcagcgcgcggcagatcaactgatgctgtcg
gcccaggctgtcgccgaactcgccgacacgctggacacggaactggagcggatcgagggc
tcggcgctgctgcgagagatggaacttccgctcgcgttcgttctcgccgaactggagtgc
gcgggcatcgccgtcgacgtcgaacacctggacgcgctcgagcgcgggttcgcgcagcgg
gtgcgcgacgcggccgaggcggcgtacgaggtgatcggcgagcaggtgaacctcgggtcg
cccaaacagctgcaggcgatcctcttcgacaagctcgacatgccgaagacgaagaagacc
aagaccggctacaccaccgacgcggacgctctcacgtcgttgtacgagaagaccgagcat
ccgttcctgaagcatctgctcgagcatcgcgacgccacccggctgcgggtgacggtggag
ggcctccagaagaccgtcgcggacgatcagcgcatccacaccacgttcaatcagaccgtg
gcggcgacgggtcggctgtcctcgacggacccgaacctgcagaacatcccggtgcgcacc
gatgcgggccgccagatccggcacgccttcgtggtggcgccgggcccggtgccgatcggg
gccgcgcccgtggagttcgagagcctgatgacggccgattactcgcagatcgagatgcgg
atcatggcgcacctctcggaggacgagggactgatcgaggccttcaacaccggtgaggac
ctgcacaacttcgtcggttcgcgtgccttcggggttccggtggaccaggtggacccgcag
atgcgttcacgggtcaaggcgatgtcgtacggcctggcctacgggttgtcggcatacggt
ctggccgctcagctcgggatcagccgcgaagaggcgaagcagcagatggagcagtacttc
gatcgcttcggcggcgtccgcgactatcttcaccgcgtcgtcgaggaggcgcgccggaac
gagtacacggccaccctgttcggccggcgccggtatctgcccgacctcaactccgacaac
ttccagcgtcgtcaggccgccgagcggatggcgctcaacgcccccattcagggcaccgcc
gccgacatcatcaaggtggcgatgatcaacgtgcagaaccggttgcgggccgagaagctg
tcgtcgcggatgctgctgcaggtgcacgacgaactggtgatcgaggtcgcccgcggcgag
cgggagacggtggaggcggtggtccgcgccgagatgggcggagcgatcgagctctcggtt
ccactggaggtctcggtcggctacggccggagttgggacgacgccgcgcactga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (22)   

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