KEGG T05256: CXX93

Gordonia sp. YC-JH1: CXX93_18455

Entry

CXX93_18455       CDS       T05256

Symbol

xth

Name

(GenBank) exodeoxyribonuclease III

K01142

exodeoxyribonuclease III [EC:3.1.11.2]

Organism

goc Gordonia sp. YC-JH1

Pathway

goc03410

Base excision repair

Brite

KEGG Orthology (KO) [BR:goc00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    CXX93_18455 (xth)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:goc03400]
    CXX93_18455 (xth)
Enzymes [BR:goc01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.2  exodeoxyribonuclease III
     CXX93_18455 (xth)
DNA repair and recombination proteins [BR:goc03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    AP endonucleases
     CXX93_18455 (xth)

SSDB

Motif

Pfam:

Exo_endo_phos Glyco_trans_4_4

Other DBs

NCBI-ProteinID:

AUH69917

Position

complement(3978302..3979186)

AA seq 294 aa
MRVATWNVNSVRQRVPRLLPWLDERSPDVVCLQETKVTDEAFAAELGDELAARGYEFAHA
GQGQWNGVALLSRVGLDDVRIAFPGAPGFPDPESAPEGRAVSAVCDGVRVYSVYVPNGRE
VGSDHYAYKLAWLAKLREAVEPEADSTVVCGDYNIIPTDDDCFDPAAFVGHTHVTDAERA
AFEALKGAGLHDVMREHWPSERIYTYWDYRAGMFHKDLGMRIDFLLAGGPVAARAQACWV
DRKARKGTKPSDHAPVFLDLDTAPDGDVGPVVPPPSRPAQVKPGSVKLPHSVAD

NT seq 885 nt +upstreamnt +downstreamnt
atgcgagtggcgacctggaatgtgaactcggtgagacagcgagtgccccggctgctgccg
tggctggacgagcggtcgcccgacgtggtgtgcctgcaggagaccaaggtcaccgacgag
gcgttcgcggccgaactgggtgacgaactcgccgcacgcggctacgagttcgcccacgcg
gggcagggacagtggaacggcgtggcgctgctgagcagggtggggctcgacgacgtccgg
atcgcattccccggcgcacccggttttcccgaccccgagtcggctccggaagggcgggcg
gtctcggcggtgtgcgacggggtgcgcgtgtactcggtgtacgtccccaacggccgcgag
gtcggctccgaccactacgcgtacaaactggcgtggctcgcgaagttgcgggaggccgtc
gaaccggaggcggattcgaccgtcgtctgcggcgactacaacatcatcccgaccgacgac
gactgcttcgatccggcggccttcgtcggtcacacgcatgtcaccgacgccgagcgtgcg
gcgttcgaggcgctgaaaggcgccggtctgcacgacgtgatgcgggagcactggcccagc
gaacggatctacacctactgggactaccgtgccggaatgttccacaaggatctcggcatg
cggatcgacttcctgctggccggaggcccggtggccgcgcgcgcccaggcctgctgggtg
gaccgcaaggcccgcaagggcaccaagcccagcgaccacgcaccggtgttcctggatctg
gacaccgcgcccgacggcgacgtgggtccggtggtcccgccgccttcgcgtccggcacag
gtgaagccggggtcggtgaagctgccgcactcggtggccgactga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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