KEGG T02216: KTR9

Gordonia sp. KTR9: KTR9_4500

Entry

KTR9_4500 CDS T02216

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

gor Gordonia sp. KTR9

Pathway

gor03410	Base excision repair
gor03420	Nucleotide excision repair
gor03430	Mismatch repair
gor03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:gor03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:gor03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:gor03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:gor03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S DNA_ligase_OB_2

Other DBs

NCBI-GI:

404217065

NCBI-GeneID:

13568454

UniProt:

J9SQC7

Position

5147970..5150351

AA seq 793 aa
MAGGEILEVDGRRISITNLSKVLYPATGTRKFEVIDYYSRIADVLLPHVRNRLITRKRWP
NGVESTPFFEKNVPESAPEWIRRHGIQHSERVISYAMADDRATLVWLAQMAVLEIHTPQW
RLPMGPDGAPMANRIVFDLDPGPRVPLHRTAEVACEIRNWLGGATTYPVTSGGKGIHLYA
RLPKPVTSDAARKVAQEVANEFARQHSDFITAKMSKSLRDDKVFIDWSQNNAAKTTLAPY
SLRGREQPWVAAPRTWEEMEDPKLSQLLYTEVLDRVDEFGDLLDGLDDPYRDADDGGSEP
VVEPAAGQVINLKEYRRKRDQSKTPEPFGDEVYRQRVESESPSDEPDSTDSPTDRAPIFV
IQEHHARRLHYDFRLEHDGVLVSWAVPKNLPTDPDQNRLAVQTEDHPMDYADFEGDIPAG
EYGGGHVSIWDKGTFELEKWRDKEVIVRLHGERVQGRYALIRTGEKNWLAHLMSDEPRPI
VPDSLTDPRPMLATDESIDGLNGRDWAFEGKWDGYRLLIRSVGGDFRLTSRSGIDMTADF
PELAGLADDLGLMDVVLDGEVVAIDSSGRTNFTLLTSRRHTDEPYALRLHLFDILFLNGS
SLLRKPWSVRRELLEELAPAFRNSAFVEVPPLLPGPGSAAVEYSREHNLEGVVAKRRNSV
YQQGRRSTTWLKHKNWSDIEVVVGGYRPGRGNRAHTIGSLLIGLPEETGLRYVGRVGTGF
TDAQLRSLAEELGPLEISRSPFLDKLDRPVESSAVWVLPKIVGEVRFMDWTTAGHLRHPS
WRGIRRDKLPGDL

NT seq 2382 nt +upstreamnt +downstreamnt
atggcaggcggcgagattctggaggtcgacggccgccggatctcgatcaccaacctctcg
aaggtgctctatccggcgaccgggacccgcaagttcgaggtcatcgactactactcgcgc
atcgccgacgtcctcctcccccatgtacgcaatcgcctgatcacccgcaagcggtggccc
aacggcgtcgaatcgaccccgttcttcgagaagaacgtccccgagagcgcgcccgaatgg
attcgacgccacggcatccagcacagtgaacgggtcatctcctatgcgatggccgacgac
cgcgccacgctggtctggctcgcccagatggccgtgctcgagatccacacaccgcagtgg
cggctccccatggggcccgacggagcgcccatggccaaccgcatcgtcttcgacctcgat
cccggtccacgggtgccgctgcaccggaccgcggaggtcgcgtgcgagatacgcaactgg
ctcggcggggcgaccacctacccggtgaccagcggcggaaagggcatccacctctacgca
cggcttcccaaacccgtgacgtccgacgcggcgcgcaaggtggcacaagaggtcgccaac
gagttcgcgcgccagcacagcgatttcatcaccgccaagatgtccaagtcgctgcgcgac
gacaaggtcttcatcgactggagccagaacaacgccgccaagaccaccctcgccccctac
tcgctgcgtggtcgcgagcaaccgtgggtggcggcgccgcgcacctgggaggagatggag
gacccgaagctctcccagctgctctacaccgaggtgctcgaccgggtcgacgagttcggc
gatctcctcgacggtctcgacgacccctaccgcgacgccgatgacggcgggtcggaaccc
gttgtcgagcccgcggcgggccaggtcatcaatctgaaggagtaccggcgcaagcgcgac
cagtcgaagacgcccgagcctttcggcgacgaggtgtaccggcagcgcgtggagtccgag
agtccctccgatgagcccgattccacggactccccgacggaccgggcaccgatcttcgtg
atccaggaacaccacgcccgacgcctgcactacgacttccgcctcgagcacgacggcgtc
ctggtgtcgtgggcggtgccgaagaacctgcccaccgatcccgatcagaaccggctcgcg
gtgcagaccgaggaccaccccatggactacgccgacttcgaaggcgacatcccggcgggc
gaatacggcggcgggcacgtgtccatctgggacaagggcacattcgagctcgagaagtgg
cgggacaaggaggtcatcgtccgcctgcacggcgagcgcgtccaggggcggtacgcgctg
atccgaaccggggagaagaactggctcgcccacctcatgagcgacgagccgcggccgatc
gtccccgacagcctcaccgatccacgcccgatgctcgcaaccgatgagtcgatcgacggt
ctcaacggccgcgactgggcgttcgaggggaagtgggacgggtaccggttgctcatccgc
tcggtcggcggcgacttccggctcacctcccgatcaggcatcgacatgaccgccgacttc
cccgaactcgccggtctcgcagacgatctcgggctcatggacgtggtactcgacggcgag
gtcgtcgccatcgactcctccggacgcaccaacttcaccctcctgacctcgcgccggcac
accgacgagccgtacgcgctgcggttacacctgttcgacatcctgttcctcaacggctcg
tcgctgctgcgcaagccgtggtcggtccggcgcgagctcctcgaggaactcgcacctgcg
ttccgcaactccgccttcgtcgaagttccgccgctgctccccggcccgggatcggccgct
gtcgagtacagccgcgaacacaatctcgaaggcgttgtcgccaaacgccgcaactcggtg
taccagcaggggcgccggtcgacgacctggctgaagcacaagaactggagcgacatcgag
gtcgtcgtcggcggatatcgaccggggcgcggcaaccgcgcgcacaccatcgggtccctg
ctgatcggtctgcccgaggagacgggactgcgctacgtcggtcgggtcggcaccggtttc
accgacgcccagctgcgttcgctcgccgaggaactcggcccgttggagatctcgcggtcg
ccgttcctggacaaactcgaccgcccggtcgagtcgagtgcggtgtgggtgctccccaag
atcgtcggcgaggtccgtttcatggactggacgacggccgggcacctgcgtcaccccagc
tggcggggaatccgccgggacaaactgcccggtgacctctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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