KEGG   Gamma proteobacterium HdN1: HDN1F_05270Help
Entry
HDN1F_05270       CDS       T01300                                 

Gene name
nei
Definition
formamidopyrimidine-DNA glycosylase
Orthology
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
gpb  Gamma proteobacterium HdN1
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:gpb00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    HDN1F_05270 (nei)
Enzymes [BR:gpb01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     HDN1F_05270 (nei)
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     HDN1F_05270 (nei)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-GI: 
NCBI-GeneID: 
UniProt: 
Position
642545..643357
Genome map
AA seq 270 aa AA seqDB search
MPELPEVETTRRGILPHIQGLRVQQVIVRQPKLRWPVSPELVQLAGEPLRDIARRGKYLL
FSFDRGIVLAHLGMSGSLRILESEKPADAHDHLDWVFENGITLRYHDPRRFGAWLWWDGE
STGHPLLESLGPEPLEPDFTAQYLYRTSRGRKVPVKSFVMNSHVVVGVGNIYANEALFSA
GISPLRAAGRISLERYQRLVESIRKILEDSIRQGGTTLRDFVGGDGKPGYFQQTLQVYGR
AGAPCLKCGESLCEIRLGQRTTVFCKVCQT
NT seq 813 nt NT seq  +upstreamnt  +downstreamnt
atgccagaactgccggaggtggaaaccacgcgccgaggaattttgccgcacatccaaggc
ttacgtgtgcagcaggtgattgtgcgccagccaaagctgcgctggccggtttcgccggag
cttgtgcagcttgcaggggaacccttgcgagacattgcgcgccgaggcaagtacctgctc
ttttcttttgatcggggtatcgtactcgcgcatctaggcatgtcaggcagcctgcggatc
ttggagtctgagaagccagcggatgcgcacgaccacttggattgggtctttgaaaatggc
atcacgcttcgctatcacgatccgcgccgctttggcgcttggctgtggtgggatggcgag
agtacaggccaccctctgcttgagtcgctaggcccagaacctctggagccagattttact
gcccagtatttgtatcgcaccagccgagggcgtaaagtcccggtaaaaagctttgtaatg
aacagccatgtggttgttggcgttggtaatatctacgcgaacgaggcgctattttctgcc
ggtatctcgccgcttcgagcggctggacgaatcagtttggagcgttatcagcgtttagtt
gagagtattcgcaaaattttggaagattcgattcggcagggcggtactactctgcgtgat
ttcgtgggtggcgatggaaaaccgggttattttcaacaaaccttgcaagtatacggcaga
gccggcgcaccttgtctaaagtgtggtgaaagcttgtgcgagatccgtcttggacaacgg
actaccgttttttgtaaagtctgccagacttga

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