KEGG   Gamma proteobacterium HdN1: HDN1F_32010
Entry
HDN1F_32010       CDS       T01300                                 
Name
(GenBank) Conserved hypothetical protein
  KO
K14441  ribosomal protein S12 methylthiotransferase [EC:2.8.4.4]
Organism
gpb  Gamma proteobacterium HdN1
Brite
KEGG Orthology (KO) [BR:gpb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:gpb03009]
    HDN1F_32010
Enzymes [BR:gpb01000]
 2. Transferases
  2.8  Transferring sulfur-containing groups
   2.8.4  Transferring alkylthio groups
    2.8.4.4  [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
     HDN1F_32010
Ribosome biogenesis [BR:gpb03009]
 Prokaryotic type
  ribosomal protein modification factors
   HDN1F_32010
SSDB
Motif
Pfam: Radical_SAM UPF0004 TRAM_2 TRAM CLP1_P
Other DBs
NCBI-ProteinID: CBL46784
UniProt: E1VPP2
Position
complement(3905375..3906721)
AA seq 448 aa
MTASNDETIQSTQKVGFISLGCPKALVDSERILTQLRIDGYEIVPTYENADIVVVNTCGF
IDAAKQESLDAIGEALTENGRVIVTGCMGADAAKIREVHPKVLAVTGPQAYEEVVSAVHQ
YVPTQLGHNPFIDLIPPTGIKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPIGDV
MGEAKRLVDAGTQELLIISQDTSAYGVDLKYRTGFWDGRPVKTKLTDLCEALGELGVWVR
LHYVYPYPHVDHIIPMMAEGKILPYLDIPFQHGSPRILQLMKRPGDIDNTLSRIHQWRNI
CPDLTLRSTFIVGFPGETEGDFQQLLDFIEEAQLDRVGAFAYSPVEGATANALPDPVPEE
LKQERLARFMEVQARISADKLQKKIGKRIEVLIDEVDEEGAVGRSHADAPEIDGMVFLNG
DTELKPGQKVMATVFAADEHDLWADRDE
NT seq 1347 nt   +upstreamnt  +downstreamnt
gtgaccgcaagcaacgacgaaaccattcaatccacccaaaaagtgggctttatcagccta
ggctgcccaaaggccttggtagattccgaacgcattctcacccaactgcgtattgatggc
tatgaaatcgtacccacctacgaaaacgccgacattgtggtggtcaacacctgcggtttt
atcgacgccgccaagcaggaatcgctagatgccattggcgaggcgcttacggaaaatggt
cgcgtgatcgtgaccggctgtatgggcgcagatgccgcaaaaatccgcgaggtacacccc
aaagtactagcggttaccggcccacaagcctatgaggaagtcgtatcggctgtacaccag
tacgttcctactcagctagggcacaacccgtttatcgacctgatcccgcctaccggaatc
aagctcacgccgcgccactacgcatacctgaaaatctccgaaggctgcaaccaccgctgc
acgttttgcatcattccttcgatgcgcggcgatctggtgagccgccccattggcgatgtg
atgggcgaagccaagcgccttgtggatgccggcacgcaagagttactgattatttcgcaa
gataccagcgcctatggagtagacctgaaataccgcaccggtttttgggatggccgccca
gtgaaaaccaagctcaccgacctttgcgaggcgctgggcgaactcggcgtatgggtgcgc
ctacactatgtttacccctaccctcatgtggaccatatcattcccatgatggcggaagga
aaaattctgccctatctggatattcccttccagcacggcagcccgcgtattctgcaactg
atgaaacgccctggggatattgacaataccctgtcgcggattcaccagtggcgcaatatc
tgccccgacctcaccttgcgtagcacctttattgtcggttttcccggtgagactgaggga
gatttccagcaattgctcgactttattgaagaagcccaactggatcgcgtcggcgcattt
gcctactcccccgtggaaggcgcaaccgccaacgcattgcccgatcccgttcctgaggag
ctcaagcaagaacgcttggcgcgctttatggaggtacaagcccgtatcagcgctgacaaa
ttgcaaaagaaaattggcaagcgcatcgaagtgctcatcgacgaagtagacgaagaaggt
gccgttggtcgcagtcatgcagacgcccccgaaattgacggcatggtgttcctgaacgga
gacacggagctgaagcccggccagaaagtaatggccaccgttttcgctgccgacgaacac
gatctctgggccgaccgcgacgagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (9)   
   KEGG COMPOUND (9)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (27)   

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