KEGG   Gordonia polyisoprenivorans: GPOL_c19590
Entry
GPOL_c19590       CDS       T01719                                 
Name
(GenBank) ribonuclease, Rne/Rng family
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
gpo  Gordonia polyisoprenivorans
Pathway
gpo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gpo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GPOL_c19590
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gpo03019]
    GPOL_c19590
   03009 Ribosome biogenesis [BR:gpo03009]
    GPOL_c19590
Enzymes [BR:gpo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     GPOL_c19590
Messenger RNA biogenesis [BR:gpo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     GPOL_c19590
Ribosome biogenesis [BR:gpo03009]
 Prokaryotic type
  rRNA processing factors
   GPOL_c19590
SSDB
Motif
Pfam: RNase_E_G IF2_N S1
Other DBs
NCBI-ProteinID: AFA72998
UniProt: H6MXW6
Position
2227700..2231215
AA seq 1171 aa
MTDNGSPADANAASDPVEDFPSKLRVHALARVLGLTSRQVLAHLAELGWHTRSPQSSVER
EMAQAVAQRVRETEPPADAATPPAEATQVETPHVEPTVAAVEEPVASVTESDVTESDVAE
TAVAETAVADTEVAEAPAEETPAEDTPTEETPAGEAATSESPADDTAAPDTAAPDTAAPD
TAAPPQSDVPMLFSAADVDSHAPVQATGEVAAGPLFLQPDTSTPAPSRSARTSSPDSTKT
DSTKTESAKTESTNRADTATDTDDQSDDDGSEDDSSGEGGRNRRRRRGRRGRGRGRGDQA
DRTDSPEDSGSQDDDSDSTDLSSREGDSADSSDDSGATGTSSADKQQSGSGKKSGKKSGK
KDGTKADGSKADGSGSDGSGPDRGGADKARGKGDDKNPADDDTAESAEDADTDDESDDAD
DSTVPTSKRRRRRRRRKGGGEAEDVAADDPPNTVVHEREPRSKRVRDEVQGISGSTRLEA
KRQRRRDGRDAGRRRPPILSESEFLARREAVERVMVVRERSANSSLHTTDYADPAAIEDY
TQVAVLEDGVLVEHFVTTETSSSMVGNIYLGRVQNVLPGMEAAFVDIGRGRNGVLYAGEV
NWDAAGLDGGSRKIEQALSPGDNVVVQVSKDPVGHKGARLTTQISLAGRYLVYVPGGSST
GISRKLPDVERKRLKQILAKLVPDDAGVIIRTASEGVSADDLAADIERLESKWKAIESAV
SDAKSDGKKNNGSQNPRALYEEPDLLVRVVRDLFNEDFRKLVIEGDKAWNLVEGYVSSVA
PDLLERVEKFERSHADAPDSFVVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVIDVN
TGKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRRLT
EALARDRTRHQVSEVTSLGLVQMTRKRLGTGLLEAFSTTCAACGGRGVIVHSAPVEVRTD
DAGRADAGSKKSRRGKRKPEQPAEQHKPAHNPAEHPMFRAMAAHAHDGDEDHDGLVHEDH
DGHEAATTSRHRPQNAPERTDTPEPEEADVAASEGTDTAAESATDTDDATDTVSSTDATG
RASTNGEVTVSAEPENVAQPASARRGRRRAARRAASPTTTSEAPAMVVADASVKPLTTFG
PITETAETAVAVRQRPRRRAAGRPAGPPADE
NT seq 3516 nt   +upstreamnt  +downstreamnt
gtgaccgacaacgggtcaccggctgacgcgaacgcagcgtcggatccggtggaagatttt
cccagcaagcttcgtgtgcacgcactcgcccgagtgctcggcctgaccagtcgccaggtg
ctcgcgcacctcgccgagttgggctggcacacccgtagcccgcaatcgagcgtcgagcgg
gagatggcccaggcggtcgcgcaacgcgtgcgcgagaccgagccgcccgccgacgcggcc
acaccgccggccgaggcaacccaggtcgagaccccgcacgtggagccgaccgtggccgcg
gtggaggagccggtggcctctgtcaccgagtccgatgtcaccgagtccgatgtggccgag
accgctgtggccgagaccgctgtcgccgacaccgaggtggcggaagcccccgccgaagag
acaccggccgaagacacgcctaccgaagagactccggcgggtgaggcagcgacatccgag
tcgccggccgatgacactgcagcgcccgacactgcagcgcccgacactgcagcgcccgac
acagcagcgccgccgcagtcggacgtgccgatgttgttctccgcggccgacgtcgacagt
catgcgcccgtccaggcgaccggtgaggtcgcggcgggccccttgttcctgcagccggac
acctcgactcccgcgccgtcccgatcggcacgcacttcgagcccagactccacgaagacc
gactccacgaagaccgaatcggcgaagaccgaatcgacgaaccgggcggataccgccacc
gataccgatgatcagtccgacgacgacggttccgaggacgattcgtcgggtgaaggcggg
cgtaaccgcaggcgccggcgtggacgtcgcggtcgcggtcgcggtcgcggcgatcaggcc
gatcgtacggactcgccggaggactccggatcgcaggacgacgactccgattccaccgat
ctgtcgtcgcgtgagggcgactccgccgattcgtccgacgactccggtgcgaccggtaca
tcgtcggccgacaagcagcagtcgggatccggcaagaaatcggggaagaagtccggcaag
aaggacggcaccaaggccgacggatcgaaagccgacggctccggaagcgacggatcgggg
cctgaccggggcggagccgacaaggccaggggcaagggtgacgacaagaaccctgccgac
gatgacacggcggagtccgccgaggacgccgataccgacgacgagtcggatgatgccgac
gattccacggtgccgacctccaagcggcgccgtcgccggcgtcgacgcaagggtggcggc
gaggccgaggatgtggcagccgacgatccgccgaacaccgtggtgcacgagcgtgagccg
cgcagcaagcgggtccgcgacgaggtgcagggcatctccgggtcgacgcggctcgaggcc
aagcgtcagcgtcgtcgggacggccgcgacgccggtcgccgtcggccaccgatcctgagt
gagtcggagttcctcgcgcgccgcgaggccgtcgagcgggtcatggtggtgcgtgaacgc
agcgccaacagttcgctgcacaccaccgattacgccgatcccgcggcgatcgaggactac
acgcaggtcgcggtgctcgaggacggcgtcctcgtcgaacatttcgtcaccaccgagacg
tcgtcgtcgatggtcggcaacatctatctcggacgcgtacagaatgtgctccccggcatg
gaggccgcgttcgtcgacatcggacgcggacgcaacggtgtcctctacgccggtgaggtc
aactgggatgccgcgggcctcgacggcgggtcccgcaagatcgagcaggcactgtcaccc
ggtgacaacgtggtcgtgcaggtcagcaaggacccggtgggtcacaagggtgctcgtctg
acgacgcagatctcgctggccgggcgttatctggtgtacgtgccgggcggttcgtcgacc
ggcatcagccgcaagctgcccgacgtcgagcgcaagcgtctcaagcagatcctcgccaaa
ctcgtccccgacgacgccggcgtgatcatccgcaccgcatcggagggggtcagcgccgac
gatctcgccgccgacatcgaacgtctcgagtccaagtggaaggcgatcgagtccgcggtc
tccgacgcgaagtccgacggcaagaagaacaacggctcgcagaatccgcgggcactgtac
gaggaacccgacctactggtgcgggtcgtccgtgacctgttcaacgaggacttccgcaag
ctcgtcatcgagggtgacaaggcgtggaacctcgtggagggctacgtcagttcggtcgct
cccgacctgctcgagcgggtcgagaagttcgagcgctcccacgccgacgcgccggactcc
ttcgtggtgcaccggatcgacgagcaactcgccaaggcgctcgaccgcaaggtctggctg
ccctcgggtggcacgctgatcatcgagcacaccgaggccatgacggtcatcgacgtcaac
accggcaagttcaccggcgcaggcggcaacctcgaggagacggtgacccgtaacaacctc
gaggcggccgaggagatcgtgcggcagatgcggcttcgcgacatcggcggcatgatcatc
gtcgacttcatcgacatggtcctcgaatccaaccgcgatctggtgttgcgccgtctcacc
gaggccctggcgcgtgatcgcacccgtcaccaggtgtccgaggtgacctcgctcggcctg
gtgcagatgactcgcaaacgactgggaaccggtctgctggaagcgttttcgaccacctgc
gccgcctgtggtggccgcggtgtgatcgtgcattccgcgccggtggaggtccggaccgac
gacgcggggcgtgccgacgccgggtcgaagaagtcgcgtcgcggcaagcgcaagcccgag
cagcccgccgagcaacacaaacccgcccacaatccggccgaacacccgatgttccgggcg
atggcggcgcacgcccacgacggcgacgaggatcatgacggtctggtccacgaggatcat
gacggtcacgaggccgcgacgacctctcgacaccgaccgcagaatgctccggagagaacc
gacacaccggaaccggaggaggccgacgtcgcggcttcggagggaaccgacaccgcggcc
gagagtgccaccgacacagacgatgccaccgacaccgtgtcgtcgaccgacgccaccggg
cgcgcatcgaccaacggcgaggtcacggtgagcgctgaacccgagaatgtggcgcaacct
gcgtcggcccgtcggggcaggcgacgcgccgcacgtcgcgccgcatcgccgacgacgacg
tcggaggcgccggcgatggtcgtcgcggacgcctcggtcaagcccctgaccacgttcggc
ccgatcaccgagacggccgagaccgctgtcgcggtccggcagcggccgcggcgtcgggct
gcgggtcgtccggccggtccgcccgccgacgagtag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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