KEGG   Gossypium raimondii: 105772934
Entry
105772934         CDS       T04129                                 
Name
(RefSeq) regulator of nonsense transcripts UPF2
  KO
K14327  regulator of nonsense transcripts 2
Organism
gra  Gossypium raimondii
Pathway
gra03013  Nucleocytoplasmic transport
gra03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    105772934
   03015 mRNA surveillance pathway
    105772934
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gra03019]
    105772934
Messenger RNA biogenesis [BR:gra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     105772934
   mRNA cycle factors
    P-body specific factors
     105772934
SSDB
Motif
Pfam: MIF4G Upf2 MIT
Other DBs
NCBI-GeneID: 105772934
NCBI-ProteinID: XP_012449899
UniProt: A0A0D2VCY0
Position
6:55131237..55143515
AA seq 1201 aa
MDNQEDESRAGGEHHGKQDDEEAVARLEEIKKSIEGKVALRQTNLNPERPDSGFLRTLDS
SIKRNTAVIKKLKQINEELKEGLMEELRSVNLSKFVSEAVSAICDAKLKSSDIQAAVQIC
SLLHQRYKDFSPSLIQGLLKVFFPGKSGDDLDADRNLKAMKKRSTLKLLLELYFVGVIED
NGIFINIIKDLTSTEHLKDRDATQTNLTLLASFARQGRVFLGLPVSGQEIQEEFFKGLGI
TADQKKTFRKAFNLYYDAVTELLQSEHASLRQMEHENAKILNAKGELSEENASSYEKLRK
SYDHLYRNVSSLAEALDMQPPVMPEDSHTTRVTTGDDASSTSGKESSNLEAIWDDDDTRA
FYECLPDLRAFVPAVLLGESESKASEQTSKAQEQPTESSSEADQSTPVAQDAVDISADSG
TLQEGKSVEKGKDKEEKDKEKTKDPDKEKGKEKEKEKEKEKEKDTDKKGENEKEKLKGSE
GTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKRLVRALFNVPRTSLELLPYYSRM
VATLSTCMKDVPSMLLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKISSPGLVF
SCLKTCLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHS
TLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFTDLDKSSIEHVLRQLRKLPWIECES
YLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLELNDYGMQQR
RIAHMRFLGELYNYEHVDSSVIFETLYLILVFGHDTAEQDILDPPEDCFRIRMVITLLQT
CGHYFDRGSSKRKLDRFLVHFQRYILSKGALPLDIEFDLQDLFAELRPNMTRYSSMEEVN
AALVELEEHEHSASTDKTVNEKHSDTEKPSSRTTSHSISTDQPSILNGSEENGGVHEEIG
DSYSESGSETIEPEGHNEDDLDEENHDDGCDTDEEDEDDGPASDEDDEVHVRQKVAEPDP
LEVASFDQELRAVVQESMEQRKLELRGRPTLNMMIPMNVFEGSIKDHHGRVVGGESGDEA
LDEEAGGSREVQVKVLVKRGNKQQTKQMYIPRDCTLVQSTKQKEAAEFEEKQDIKRLVLE
YNDRVEEENNGLGTQTLNWPSGNSRAYGRGNSWEGSSGRSGGSRHRHHSHSGSGSYYGRK
K
NT seq 3606 nt   +upstreamnt  +downstreamnt
atggataaccaagaggatgaatctcgggctggaggtgaacaccatggaaaacaagatgat
gaggaagccgttgcacgtcttgaggaaattaagaaatctattgagggaaaagtggctctt
cgtcaaaccaatttgaatcctgaaaggcctgactctggcttcctcaggactttggattct
agtattaagcgcaatacagctgttattaaaaaattaaagcagataaatgaagagctgaag
gaaggattgatggaggagctacgtagtgtcaatttaagtaaatttgttagtgaagctgtg
tctgctatttgtgatgccaaacttaagagttcggatatacaagctgcagtgcagatctgc
tctctgcttcatcaaaggtacaaagatttctcaccaagtctaatacaagggctcctgaaa
gtcttctttcctggaaaatctggggatgatttagatgcagacaggaacttgaaggcaatg
aagaagcgtagcactttgaaacttcttctggaactttactttgttggagttatagaggac
aatggaatctttatcaatatcattaaggatcttactagcacagagcacttaaaggaccga
gatgctactcagacaaatttgactcttcttgctagttttgctcgacaagggcgagtgttt
ctaggacttccagtgtctggtcaagaaattcaagaagagttcttcaagggccttggtatc
acagcggatcaaaagaaaacttttaggaaggcatttaatctatattatgatgctgtaact
gaacttcttcagtctgagcatgcgtcgcttcgccaaatggagcatgagaatgccaagatt
ctaaatgctaaaggagagctcagtgaagaaaatgcatcttcatatgaaaagctacgcaaa
tcttatgatcatttgtaccgcaatgtctcatctttagctgaagcacttgatatgcagcct
ccagtcatgccagaggacagtcacacaactagggttactactggggatgatgcttcatca
acatccggaaaagagtcttcaaaccttgaagctatatgggatgatgacgacactagagct
ttctatgaatgcttacctgatcttagagcatttgtcccagcagtattattgggagagtct
gagtccaaagcaagcgagcaaacgtcaaaggcacaagagcaaccaactgaatcctcttct
gaagctgatcaaagtacaccagttgcacaagatgccgtggacatttctgcagactctggc
actctgcaagaagggaagagtgtagagaaagggaaggataaagaagaaaaggataaggaa
aaaaccaaagatcctgacaaggagaaagggaaagagaaagagaaagagaaagagaaagag
aaagaaaaggatacagataaaaaaggagaaaatgaaaaggagaagctcaaaggtagtgaa
gggacaaatttggatgctctactgcaaagactcccaggttgtgtgagtcgtgaccttatt
gatcaactgacggtggagttctgttatttgaattcaaaatcaaatcggaaaagacttgtg
agagctttgtttaatgtaccaaggacttctttggagttgcttccatactactcacgcatg
gttgcaacattgtcaacttgtatgaaggatgttccctctatgctcttgcagatgttggag
gaagagttcaactttctaatcaataaaaaggatcagatgaacattgaaacaaagatcagg
aatattaggtttattggagaactttgtaagttcaaaatttcatcacctggccttgtcttc
agttgtctgaagacttgtttagatgatttcactcatcataacattgatgtcgcttgcaat
cttcttgagacgtgcggtcgttttctgtatcgttctcctgaaactaccataagaatggct
aacatgttggagatcttgatgcgcttgaaaaatgtaaaaaatttggatcctcggcacagc
acacttgtggaaaatgcttactacctatgcaaaccacctgaaagatctgcacgggtctcc
aaagtccgtcctccattgcaccagtacattaggaaattgctatttacagatcttgataag
tcttccattgagcatgtgctgaggcaacttcgtaaattaccatggattgaatgtgaatca
tatctcttaaagtgcttcatgaaggttcacaaggggaaatatggccaaattcacttgatt
gcttctctcactgctggtttgagtcgctatcatgatgaatttgctgttgctgttgttgat
gaggttttggaggagattagacttggcctggagttaaatgattatgggatgcagcagagg
cgcattgctcatatgcgctttcttggggagctatacaactatgagcatgttgattcttcc
gtcatctttgaaacactctatttgattcttgtttttggccatgatacagcagagcaagat
atcctcgatccacctgaggattgttttcgaatcaggatggttattactcttcttcagaca
tgtgggcactactttgaccgaggttcttctaagagaaaacttgatcggttcttggtacat
ttccagaggtacattcttagcaagggtgccttaccactggacattgaatttgatttgcag
gacttatttgccgaattacgtcccaacatgacccggtattcgtctatggaagaagttaat
gcagctttagtagaacttgaggaacatgaacatagtgcttcaactgacaagacagttaat
gagaagcactctgataccgaaaagccttctagcaggacgacttcccattcaatctcaact
gaccaacctagcattttgaatggttccgaggaaaatggtggggttcacgaggaaattggt
gacagttacagtgaatcagggagtgaaaccattgaaccagagggacataatgaagatgat
ttggatgaagagaatcatgacgatggatgtgatactgatgaggaagatgaagatgatgga
cctgcttcggatgaggatgatgaagttcatgtcaggcagaaggtagctgagcctgatcct
ctagaagtagccagttttgaccaggagctccgggctgtagtgcaggagagcatggagcaa
cgcaagttggagctgcggggccgacctacattaaacatgatgataccaatgaatgtattt
gagggttctatcaaagatcatcatggaagggtagtgggaggggaaagtggtgatgaagca
ttggatgaagaggctggaggaagccgggaagtgcaggtgaaagttctcgtgaagcggggg
aacaaacaacagacgaaacaaatgtatattccccgtgattgtacgctagtccaaagcacg
aaacagaaagaagctgcggagtttgaagagaaacaagacattaagaggctggtcttggag
tataatgacagggtagaggaagagaataatggacttgggacacagacattgaattggcca
agtggaaatagcagagcttatggccgtggaaactcatgggaaggatctagcggcaggagt
ggaggatcacgtcatcgccatcatagtcattcaggaagtggatcttattatggcagaaaa
aagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

Download RDF
DBGET integrated database retrieval system