KEGG   Gossypium raimondii: 105773252
Entry
105773252         CDS       T04129                                 
Name
(RefSeq) polyadenylate-binding protein 2
  KO
K13126  polyadenylate-binding protein
Organism
gra  Gossypium raimondii
Pathway
gra03015  mRNA surveillance pathway
gra03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    105773252
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105773252
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gra03019]
    105773252
   03041 Spliceosome [BR:gra03041]
    105773252
Messenger RNA biogenesis [BR:gra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     105773252
   mRNA cycle factors
    Stress granule specific factors
     105773252
Spliceosome [BR:gra03041]
 Complex C
  Other components
   Complex C specific factors
    105773252
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_occluded RRM_3 RRM_7 MARF1_RRM1 Nup35_RRM YflT DUF5062 Tubulin_3 IF2_N
Other DBs
NCBI-GeneID: 105773252
NCBI-ProteinID: XP_012450432
UniProt: A0A0D2U7J8
Position
6:complement(1753812..1758004)
AA seq 620 aa
MAQIEVQRQPAISVPNAVAPQTGGVQFIPTSLYVGDLDVTVTDEQLFQLFGQVARVASVR
ICRDLATGRSLGYGYVNYSNPRDAARALDLLNFTPLNNKPIRIMYSQRDPSLRKSGTANI
FIKNLDKSIDHKALHDTFSAFGNILSCKISTDGFGQSKGYGFVQFDSEESAQNAIDKLNG
MLINDKQVYVGHFLRKQERETTSSKTKFNNVYVKNLSESTTDEDLKTIFGEYGEITSAVI
MRDADGKSKCFGFVNFEIADDAAKAVEALNGKKFEEKEWYVGKAQKKSEREHELKSRFEQ
TVKEAADKLKGMNLYVKNLDDSIDDEKLKELFSEYGKIISCKVMRDPSGVSKGSGFVAFS
TPEEASRALAEMNHKLVVSKPLYVALAQKQEERRASLQAQFSQMRPLAIPSVAPRMPMYP
SGAPGLGQQFLYGQAPPAIIPQAGFGYQQQLVPGVRPGGPPVPNFFVPMVQQGQRPGGRR
GAGPFQQAQQPMMPRGRANRYPPGCNVPGPLQDAGTGQPMPLQPLATALANSTPEQQRTM
LGESLYPLVEHLECDAAAKVTGMLLEMDQTEVLHLIESPEALKAKVAEALEVLKSVAAKP
QVNNPADQLASLSLNDNHVS
NT seq 1863 nt   +upstreamnt  +downstreamnt
atggcgcagattgaggttcagcgtcaaccggcgatttccgtaccaaacgccgtcgctccg
caaaccggaggggtgcagttcataccgacgtcactatatgttggggatcttgatgttacc
gttacggatgagcaactgtttcaattgtttggacaagttgctcgggttgcttccgtaagg
atttgccgcgacttggctacgggccgttcactcggatacggttacgtcaactatagcaat
cctcgtgatgcggctagggctttggatctacttaatttcactccactgaataataagcct
attcgtatcatgtattctcaaagggaccctagtcttcgtaagagtggtactgcaaacata
tttatcaagaatctggacaagtctattgaccacaaagcattacatgatacgttttctgca
tttggaaatattctgtcttgcaagatatctacagatggttttggccagtctaaaggctat
ggttttgtgcaatttgacagtgaagaatctgctcaaaatgcaattgataaattgaatggc
atgttgattaatgacaagcaggtctatgttggacatttccttcgtaagcaggaaagagag
accacatcgagtaagaccaaattcaataatgtttatgtgaaaaatctttccgagtctaca
acagatgaagacttgaaaacaatttttggtgagtatggtgaaattactagtgctgtaatt
atgagggatgcagatggcaagtcgaagtgttttggatttgtcaactttgaaattgctgat
gatgctgctaaagctgttgaagctcttaatggaaagaaatttgaagagaaagagtggtat
gttggaaaagcccagaaaaagtcagaaagagagcatgagctaaaatctcgttttgagcaa
actgtgaaggaagctgctgataaacttaagggtatgaatttatatgttaaaaacttggat
gatagtattgatgatgaaaagctgaaggaactgttttcggagtatggcaaaattatttcg
tgcaaggtcatgcgtgaccctagtggagttagtaagggctctgggtttgttgcattttct
acacctgaagaagcatcacgagctcttgctgagatgaatcataaattggttgttagcaaa
ccactttatgttgcacttgctcaaaagcaagaagagagaagagcaagtctacaggctcag
ttttcacaaatgagacctcttgctatcccctcggttgctcctcgtatgcccatgtaccct
tctggtgcaccaggtcttggccaacaatttttatatgggcaagcacctccagctatcatt
cctcaagctggttttggttatcagcagcaactggttcctggagtgaggcctggtggccct
cctgtaccaaatttctttgttcccatggtacagcagggccagcgcccagggggacgacgc
ggagcaggtccatttcaacaggctcaacaaccaatgatgcctaggggacgtgccaatcga
tacccacctggttgtaatgtgccgggtccattgcaagatgctggcactggacagcctatg
cctcttcaacctttggctactgctcttgcaaattcaacccctgagcaacaaaggacgatg
cttggtgaaagcctatacccccttgtggaacatctcgagtgtgatgcagcagccaaggtt
accggcatgcttctagagatggaccaaactgaagttttgcatctcattgagtcacccgaa
gctttgaaagctaaagtagcagaggccttagaggtgttgaagagtgttgctgcaaagcca
caggtcaacaatcctgcagaccaattggcttcactatctttgaatgataaccatgtctct
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (12)   
   Pfam (12)   
All databases (25)   

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