KEGG   Gossypium raimondii: 105789325
Entry
105789325         CDS       T04129                                 
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
  KO
K14326  regulator of nonsense transcripts 1 [EC:3.6.4.13 5.6.2.3]
Organism
gra  Gossypium raimondii
Pathway
gra03013  Nucleocytoplasmic transport
gra03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    105789325
   03015 mRNA surveillance pathway
    105789325
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gra03019]
    105789325
Enzymes [BR:gra01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     105789325
Messenger RNA biogenesis [BR:gra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     105789325
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     105789325
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase DEAD UvrD-helicase Helicase_RecD nSTAND3 ATPase PhoH AAA_16 SRP54 AAA_22 AAA_32 Ribosomal_S13_N AAA_25 AAA
Other DBs
NCBI-GeneID: 105789325
NCBI-ProteinID: XP_012472116
UniProt: A0A0D2P3A6
Position
2:complement(47653121..47662913)
AA seq 1262 aa
MDSQFDTASQPDPATDAYTFLEFNTQGESDFEYTDFRDPIRSWPTPSDATVADRSASDHH
SDTPASSSPSSVPKGAGRGATSNNNNSNSNSVSNSGAVVDSLATGISGLNFEETVGDEDG
GYEYGKGDFAEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKE
VCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLS
QWCPLIDDRCFLQWLVKIPSEKEQLRARQISAQQINKVEELWKTNPDASLEDLEKPGVDD
EPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVF
PKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHG
FSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGL
PELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD
QLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVQHLDTSEKSELHKLQQLKDEQGE
LSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPEC
LIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLILLGVKPIRLQVQYRMHP
CLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLN
RTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASV
DSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQALWN
GLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVPSDNFGSAASTS
PNADRRGSRARGAYMPPGPPNGTHKPGVHPSGFPMPRVPLPPFPGPQPYAIPARGAVHGP
VGAVPQVPQPGTRGFGAGRGNGGAPIGSHLPHQQGTQQNIGTIGSSFNFPLENPNSQPSV
GGPLSQPGFVNNVQGPSQTFRDGFSMGGMSQDFLGDDFKSQGSHVPYNIADFSTQASQSG
YAVDYVTQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMNHGSQGLFTQAGFNDPSH
DDASQSHFGVSNPNQLQSQGLMNSLYSQSFSHYNTQPLNLPAPQQQPQQDQGSQNQKLHY
NG
NT seq 3789 nt   +upstreamnt  +downstreamnt
atggattctcaattcgatacggcgtcgcaacctgaccctgccaccgacgcttataccttc
ctcgaattcaacacccaaggcgagtccgatttcgagtacaccgacttccgtgatccgatt
cgttcttggccgacgccttctgacgctactgtcgctgatcgctcagcctccgaccaccat
tccgacactcccgcgtcctcttctccttctagcgttccgaaaggcgctggccgtggcgcg
acgagcaataataataacagcaatagcaatagtgttagcaatagtggggccgtggttgat
tcgttagcgacggggattagtggattgaattttgaggagacggttggggatgaggatggc
ggttatgagtatgggaaaggggatttcgcggaacacgcttgtcgatattgtggggtttct
aatccggcttgtgtggttcgttgtaatgttccttcatgtaggaaatggttttgtaattca
agagggaatacgtcgggatcgcatattgttaatcatcttgtacgagctaaacacaaggaa
gtttgcctccataaagatagtcctttgggagaaacaattcttgaatgctacaactgtgga
tgcagaaatgtcttccttcttggttttatatctgctaagacagagagtgttgttgttctt
ctttgtagagaaccttgtttgaatgtaaatgctttgaaagacatgaattgggacttgagt
cagtggtgcccccttattgatgatagatgctttctgcagtggctggttaagatcccgtct
gaaaaagaacagctacgggcgcggcaaataagtgctcaacaaataaacaaggtagaagag
ctttggaagacaaatcctgatgcctcccttgaagatcttgagaagcctggtgtagatgat
gaaccacagcctgtggccttgaagtatgaagatgcttatcagtatcaaaatgtttttgct
ccacttatcaagcttgaagctgattatgacaaaatgatgaaagaatctcaaagcaaggat
aatgttacagttcgatgggatattgggttaaacaagaagcgtattgcatattttgtcttt
ccaaaggaagacaatgagctgcgtctagtacctggtgatgagttgcgtctgcgttattca
ggagatgctgctcatcctgcatggcagtctgttgggcatgtgatcaagctaacggcacaa
gaagaggttgcgctagagctccgtgctagtcagggagttcctgttgatgtgaaccatggg
ttcagtgttgattttgtgtggaagagtacaagttttgaccgaatgcaaggggcaatgaaa
acatttgcagttgatgaaactagtgttagtggatatatttaccatcatctgcttggtcac
gaggttgaggtgcagatggttcgcaacgcactgcctcgtcgttttggtgcccctggtctg
cctgaattgaatgcatcccaagtttttgccgtgaagagtgttcttcagaagcctataagt
ttgattcaaggtccccctggaactggaaaaactgttacttctgctgccattgtatatcac
atggctaaacagggtcaggggcaggttctggtctgtgctccaagtaatgttgctgttgat
cagctagctgaaaaaataagtgccactggtttaaaggttgtaagactttgtgcaaaatca
agagaagctgtaagttctcctgttgaacatttgaccctgcattatcaggttcaacatctt
gacacatctgagaagagtgaacttcacaagttacaacaattgaaagatgaacaaggtgag
ttgtcgagcagtgacgagaaaaaatacaaagcactgaagcgagcaactgagagggaaata
tcccaaagtgctgatgtcatttgttgcacttgtgttggggctggagatcctagattggct
aattttaggttccgtcaggtacttattgatgaatctactcaggcgacggaacctgagtgt
ctcattcctttagttcttggcgcgaagcaggttgttcttgttggtgatcattgccaactt
ggtcctgttattatgtgcaagaaagctgcccgtgctggattagcacagtctttgtttgaa
cgtctaattttacttggtgttaagccaattagattgcaggttcaatatcgtatgcaccca
tgtttgtcagagtttccttctaacagcttctatgagggcaccttacaaaatggagtgaca
atcaatgaaaggcaatcttcgggcattgatttcccttggcctgtgcctaatcgtcccatg
tttttttatgtacagatggggcaagaggagattagtgctagtggaacatcatatctaaat
agaactgaggctgcaaatgttgaaaagattgttaccacattcttgaggagtggtgttgtt
cctagtcagattggggtcataacaccttatgagggacaaagggcgtatattgtgaattat
atgtcaagaaatggtgctttgagacagcagctttacaaggaaatcgaggttgcaagtgtc
gattctttccaaggaagggaaaaagattacatcatcttgtcttgtgtgagaagtaatgag
catcagggtatcggattcctaaatgatcctcgcaggcttaatgttgccctaacacgtgct
cgatatggtatagtaattcttggaaatcctaaagttcttagcaaacaagctctgtggaac
ggtttattgacacattacaaggaacatgagtgcctggttgaaggacccctcaataacttg
aagcagagtatggttcaattccaaaagcccaaaaagatttacaatgaccggagacttttc
tttggaggtggacctgggattgtgcctagtgataattttgggtctgctgcctcaactagt
ccaaatgctgatagaagaggcagtcgtgctcgaggtgcttatatgcctcctggtccaccc
aatggtactcacaagcctggagtgcacccttctgggttcccaatgcctcgggttccactt
ccaccttttcctggtcctcagccttacgctattcctgctcgtggagctgtacatggacca
gtgggagctgttcctcaggtacctcaacctggaactcgaggctttggggctgggcgtggt
aatggtggtgctcctatcggtagtcatcttccacaccagcaaggcacacagcaaaacatt
ggaactattggatcttctttcaacttccctctggagaatccaaatagccagccatccgtg
ggtggtccattatctcagcctggatttgtcaacaatgtccaagggccgagtcaaactttc
cgtgatggattttcaatgggaggaatgtcccaggacttcttgggtgatgacttcaaaagc
caaggctcacatgtcccttataacattgctgatttttctacacaggcttctcagagtgga
tatgctgttgattacgttacacaaggagcacagggcgggtttccagggaacttcctaaac
cagaattctcaagctggatattctcgttttggttctggaaatgatttcatgtctcaggac
tacatgaatcatggatcacaaggcctgtttactcaggctggctttaatgacccttctcat
gatgatgcatctcaaagccactttggcgtgtctaatcccaaccagcttcagtcccagggc
ttgatgaattctctctactcccagtccttttcccactacaacacacagccactgaacttg
ccggctcctcaacagcagcctcagcaggaccagggctcccaaaaccagaaacttcactat
aacggttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (21)   
   Pfam (21)   
All databases (36)   

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