KEGG   Gossypium raimondii: 105795013
Entry
105795013         CDS       T04129                                 
Name
(RefSeq) histone deacetylase 19 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
gra  Gossypium raimondii
Pathway
gra03082  ATP-dependent chromatin remodeling
gra03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    105795013
   03083 Polycomb repressive complex
    105795013
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:gra03036]
    105795013
Enzymes [BR:gra01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     105795013
Chromosome and associated proteins [BR:gra03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     105795013
   HDAC complexes
    Sin3A-HDAC complex
     105795013
    BRAF-HDAC complex
     105795013
    REST complex
     105795013
    SHIP complex
     105795013
    MiDAC complex
     105795013
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     105795013
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    105795013
  Chromatin remodeling factors
   NuRD complex
    105795013
SSDB
Motif
Pfam: Hist_deacetyl PsbQ
Other DBs
NCBI-GeneID: 105795013
NCBI-ProteinID: XP_012479892
UniProt: A0A0D2NGJ8
Position
3:complement(58616183..58620614)
AA seq 485 aa
METGGNSLPSGPDGVKRKVLYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQ
VHKPVPARDRDLCRFHADDYVNFLHNVTPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQT
YAGGSIGGAVKLNHGFCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHQRVLY
VDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKYYSLNVPLDDGI
DDESYHYLFKPIISKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN
VPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYNLHVSPSNMEN
KNSRQLLLEIRNKLLDNLSKLEHAPSVQFQEREPDTELPEADEDQDDGDERWNSDSDMDI
DEDRKLIIPSRVKREVIEPETRDPVCSMEVQIETIEQTRGFDTATNETGVDVSPMPIDVP
TVKVE
NT seq 1458 nt   +upstreamnt  +downstreamnt
atggaaactggagggaattcgttaccttcggggcctgatggggtgaagaggaaggtgctc
tatttctatgaccctgaggtggggaactactattatggacaaggtcatcctatgaagcct
cacaggattcgaatgactcatgcccttttagcacactatgggctgcttcagcatatgcaa
gttcacaagcctgtccctgccagggatcgggatctttgccgcttccatgctgatgattac
gtgaactttctccacaacgtaacccctgaaacacagcaagatcagctcaggcagctcaag
cgctttaatgttggtgaggattgtcctgtcttcgatggccttttctccttctgccaaaca
tatgcaggtgggtctattggtggtgctgttaaactaaaccatggtttctgtgacattgcc
attaattgggctggtggcttgcatcatgcaaagaagtgcgaggcttcagggttttgctat
gtcaatgatattgtccttgcaattctggaacttcttaagcagcatcagcgtgttctatac
gttgatattgatatccaccatggagatggtgtggaggaagcattctatacaactgacagg
gtcatgaccgtttcatttcataaatttggggattattttcctggtacaggtgatatacgt
gatattggatattccaaagggaaatactattccctcaacgttcctttggatgatgggatt
gatgatgagagttatcattacttgtttaagccaattatcagtaaagttatggaagttttc
aggcctggggctgtggtccttcaatgtggtgctgactctctttctggagatcggttgggg
tgtttcaatctttcaatcaagggccatgcagagtgcgttaaatttatgagatcatttaac
gttccattgttgcttctaggcggtggtggctataccattcggaatgttgctcgctgttgg
tgctatgagacaggagttgcacttggagttgaagttgacgacaagatgcctcaacacgag
tattacgagtattttggtcctgattataatcttcacgtttcccctagtaacatggaaaac
aagaattcacgccagttactcctagaaatacgcaataaactacttgacaatctctcgaag
cttgagcatgcaccaagtgtccagtttcaagaacgagaacctgacaccgagcttcctgag
gctgatgaagatcaggatgatggagatgagagatggaactctgattcggacatggatatt
gatgaggaccgtaagctcatcattccaagtagagtaaagagagaagtgatcgaaccagag
acgagagatccagtatgctctatggaggttcaaatagaaactattgaacaaactagagga
tttgatactgcaaccaatgaaactggtgtagatgtcagtccaatgcctattgatgtacca
actgtgaaagttgagtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (2)   
   Pfam (2)   
All databases (22)   

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